6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18588
95 % 1 1 17248
90 % 1 1 16930
70 % 1 1 14129
50 % 1 1 12843
40 % 2 2 10691
30 % 2 2 10336
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17106
95 % 1 1 15268
90 % 1 1 15010
70 % 1 1 14131
50 % 1 1 12845
40 % 1 1 12010
30 % 1 1 11059
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15031
95 % 1 1 15267
90 % 1 1 15009
70 % 1 1 14130
50 % 1 1 12844
40 % 2 2 10692
30 % 2 2 9870
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18592
95 % 1 1 17250
90 % 1 1 15012
70 % 1 1 14133
50 % 1 1 12846
40 % 3 3 9514
30 % 3 3 8856
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18591
95 % 1 1 17249
90 % 1 1 15011
70 % 1 1 14132
50 % 3 3 8954
40 % 3 3 8562
30 % 3 3 8023
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1921
95 % 1 3 2500
90 % 1 3 2572
70 % 1 3 2619
50 % 1 3 2637
40 % 6 8 2198
30 % 6 8 2221
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15032
95 % 1 1 15269
90 % 1 1 15013
70 % 1 1 14134
50 % 2 2 11391
40 % 2 2 10708
30 % 2 2 9886
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2622
95 % 1 3 3412
90 % 1 3 3489
70 % 4 6 2686
50 % 4 6 2644
40 % 4 6 2717
30 % 4 6 2658
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15033
95 % 1 1 15270
90 % 1 1 15014
70 % 1 1 14135
50 % 1 1 12847
40 % 6 6 7301
30 % 6 6 6870

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RAO 4 F Afp5 42906
2 6J0N 7 n, o, p, q, r, s Pvc5 291112