6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14266
95 % 1 1 14496
90 % 1 1 15968
70 % 1 1 13255
50 % 1 1 12285
40 % 2 2 10270
30 % 2 2 9492
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14268
95 % 1 1 16431
90 % 1 1 16131
70 % 1 1 13471
50 % 1 1 12270
40 % 1 1 11499
30 % 1 1 10582
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14267
95 % 1 1 14497
90 % 1 1 14278
70 % 1 1 13470
50 % 1 1 12269
40 % 2 2 10253
30 % 2 2 9478
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17659
95 % 1 1 16266
90 % 1 1 14046
70 % 1 1 13473
50 % 1 1 12271
40 % 3 3 9085
30 % 3 3 8454
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14269
95 % 1 1 14498
90 % 1 1 14279
70 % 1 1 13472
50 % 3 3 8547
40 % 3 3 8185
30 % 3 3 7662
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1875
95 % 1 3 2435
90 % 1 3 2493
70 % 1 3 2473
50 % 1 3 2554
40 % 6 8 2119
30 % 6 8 2097
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14270
95 % 1 1 14499
90 % 1 1 14280
70 % 1 1 13474
50 % 2 2 10921
40 % 2 2 10271
30 % 2 2 9493
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2406
95 % 1 3 3080
90 % 1 3 3157
70 % 4 6 2476
50 % 4 6 2502
40 % 4 6 2521
30 % 4 6 2504
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14271
95 % 1 1 14500
90 % 1 1 14281
70 % 1 1 13475
50 % 1 1 12272
40 % 6 6 6933
30 % 6 6 6520

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RBN 1 A, B Afp1 42906
2 6RAP 1 A, B Afp1 42906
3 6RAO 1 A, B Afp1 42906
4 6J0N 8 1, 2, 3, 4, 5, z Pvc1 291112
5 6J0F 2 a, b, c, d, e, f Pvc1 291112
6 6J0B 2 a, b, c, d, e, f, g, h, i, j, k, l Pvc1 291112