6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14267
95 % 1 1 14278
90 % 1 1 14067
70 % 1 1 13283
50 % 1 1 12119
40 % 2 2 10273
30 % 2 2 9495
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14269
95 % 1 1 16447
90 % 1 1 14291
70 % 1 1 15085
50 % 1 1 13660
40 % 1 1 11521
30 % 1 1 10579
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14268
95 % 1 1 14525
90 % 1 1 14290
70 % 1 1 13480
50 % 1 1 12292
40 % 2 2 10258
30 % 2 2 9478
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14270
95 % 1 1 14652
90 % 1 1 14293
70 % 1 1 13482
50 % 1 1 12294
40 % 3 3 9106
30 % 3 3 8449
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17654
95 % 1 1 16449
90 % 1 1 14292
70 % 1 1 13481
50 % 3 3 8552
40 % 3 3 8199
30 % 3 3 7658
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1789
95 % 1 3 2360
90 % 1 3 2430
70 % 1 3 2478
50 % 1 3 2561
40 % 6 8 2066
30 % 6 8 2102
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14271
95 % 1 1 14526
90 % 1 1 14294
70 % 1 1 13483
50 % 2 2 10927
40 % 2 2 10274
30 % 2 2 9496
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2429
95 % 1 3 3116
90 % 1 3 3206
70 % 4 6 2495
50 % 4 6 2510
40 % 4 6 2524
30 % 4 6 2504
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14272
95 % 1 1 14527
90 % 1 1 14295
70 % 1 1 13484
50 % 1 1 12295
40 % 6 6 6935
30 % 6 6 6510

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 9 t, u, v, w, x, y Pvc3 291112