6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Sequence Similarity Clusters for the Entities in PDB 6J0N

Entity #1 | Chains: D,E,F,G,H,I
Pvc9 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14735
95 % 1 1 14698
90 % 1 1 14759
70 % 1 1 13892
50 % 1 1 12651
40 % 2 2 10563
30 % 2 2 9779
Entity #2 | Chains: J,K,L,M,N,O
Pvc11 protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14737
95 % 1 1 16945
90 % 1 1 16635
70 % 1 1 13894
50 % 1 1 12473
40 % 1 1 11851
30 % 1 1 11965
Entity #3 | Chains: P,Q,R,S,T,U
Pvc12 protein, length: 950 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14736
95 % 1 1 14956
90 % 1 1 14760
70 % 1 1 13893
50 % 1 1 12652
40 % 2 2 10549
30 % 2 2 9766
Entity #4 | Chains: V,W,X,Y,Z,a
Pvc4 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14811
95 % 1 1 16779
90 % 1 1 16636
70 % 1 1 13896
50 % 1 1 12654
40 % 3 3 9348
30 % 3 3 8691
Entity #5 | Chains: b,c,d,e,f,g
Pvc7 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14738
95 % 1 1 14957
90 % 1 1 14761
70 % 1 1 13895
50 % 3 3 8787
40 % 3 3 8406
30 % 3 3 7878
Entity #6 | Chains: h,i,j,k,l,m
Pvc2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 1873
95 % 1 3 2453
90 % 1 3 2509
70 % 1 3 2563
50 % 1 3 2596
40 % 6 8 2113
30 % 6 8 2138
Entity #7 | Chains: n,o,p,q,r,s
Pvc5 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14739
95 % 1 1 14958
90 % 1 1 14762
70 % 1 1 13897
50 % 2 2 11250
40 % 2 2 10564
30 % 2 2 9780
Entity #8 | Chains: 1,2,3,4,5,z
Pvc1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2521
95 % 1 3 3245
90 % 1 3 3318
70 % 4 6 2644
50 % 4 6 2669
40 % 4 6 2621
30 % 4 6 2611
Entity #9 | Chains: t,u,v,w,x,y
Pvc3 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14740
95 % 1 1 14959
90 % 1 1 14763
70 % 1 1 13898
50 % 1 1 12655
40 % 6 6 7112
30 % 6 6 6683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J0N 9 t, u, v, w, x, y Pvc3 291112