Sequence Similarity Clusters for the Entities in PDB 6JCJ

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 149 43
95 % 96 239 14 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 96 240 16
70 % 96 250 22
50 % 96 250 46
40 % 193 500 8
30 % 195 508 13
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 97 185
95 % 98 236 16 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 98 243 14
70 % 98 250 21
50 % 98 250 44
40 % 194 500 8
30 % 196 508 13
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 94 403
95 % 81 108 439 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 81 108 472
70 % 81 108 511
50 % 81 108 541
40 % 81 108 578
30 % 81 108 605
Entity #4 | Chains: F
Tubulin tyrosine ligase protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 92 411
95 % 78 92 557 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 78 92 576
70 % 78 95 591
50 % 78 95 626
40 % 78 95 657
30 % 78 95 694

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures