Sequence Similarity Clusters for the Entities in PDB 6M9Y

Entity #1 | Chains: A,C
Fluorescent protein lanFP6A protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48552
95 % 1 1 37428 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35685
70 % 1 1 31847
50 % 1 1 27765
40 % 1 1 25241
30 % 1 1 22410
Entity #2 | Chains: B,D
Fluorescent protein lanFP6A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48551
95 % 1 1 37427 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35684
70 % 1 1 31846
50 % 1 1 27764
40 % 1 1 25240
30 % 1 1 22409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures