6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Sequence Similarity Clusters for the Entities in PDB 6MSB

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2022
95 % 1 31 2242
90 % 1 31 2226
70 % 1 32 2289
50 % 1 32 2333
40 % 7 56 1304
30 % 7 56 1345
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 4173
95 % 1 16 4973
90 % 1 20 3944
70 % 1 20 3973
50 % 1 20 3924
40 % 1 20 3898
30 % 1 20 3803
Entity #11 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 33 1490
95 % 5 33 1963
90 % 5 33 2015
70 % 5 33 2075
50 % 5 35 1997
40 % 5 35 2028
30 % 5 35 2051
Entity #12 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 29 1828
95 % 1 33 2051
90 % 1 33 2100
70 % 1 30 2426
50 % 1 30 2461
40 % 6 53 1404
30 % 6 53 1437
Entity #13 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2842
95 % 1 25 2812
90 % 1 25 2952
70 % 6 49 1434
50 % 6 49 1458
40 % 6 49 1503
30 % 6 49 1537
Entity #14 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2841
95 % 1 21 3488
90 % 1 21 3583
70 % 6 39 1776
50 % 6 39 1844
40 % 6 39 1880
30 % 6 39 1899
Entity #15 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 30 1740
95 % 1 30 2263
90 % 1 30 2311
70 % 6 55 1253
50 % 6 77 615
40 % 11 147 388
30 % 11 147 403
Entity #16 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 31 1728
95 % 1 31 2220
90 % 1 31 2271
70 % 1 31 2339
50 % 6 55 1299
40 % 6 55 1337
30 % 11 101 711
Entity #17 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 7248
95 % 1 31 2240
90 % 1 31 2237
70 % 1 31 2360
50 % 6 49 1459
40 % 12 147 388
30 % 12 147 403
Entity #18 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2037
95 % 1 22 3244
90 % 1 22 3316
70 % 1 22 3324
50 % 6 46 1551
40 % 6 46 1588
30 % 12 101 711
Entity #19 | Chains: u,w
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1620
95 % 429 520 4
90 % 441 535 5
70 % 488 585 9
50 % 501 601 11
40 % 501 605 13
30 % 512 622 18
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1996
95 % 1 31 2222
90 % 1 31 2238
70 % 1 31 2357
50 % 1 31 2356
40 % 1 31 2414
30 % 1 31 2431
Entity #20 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 50 491
95 % 24 54 581
90 % 24 54 608
70 % 24 54 634
50 % 311 363 43
40 % 316 369 46
30 % 1941 2285 2
Entity #21 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 533
95 % 24 53 578
90 % 24 53 604
70 % 24 53 629
50 % 27 57 600
40 % 316 368 44
30 % 1942 2285 2
Entity #22 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 535
95 % 24 53 580
90 % 24 53 607
70 % 24 53 632
50 % 314 366 39
40 % 316 368 45
30 % 1943 2285 2
Entity #23 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 43 561
95 % 24 54 576
90 % 24 54 602
70 % 24 54 633
50 % 313 365 41
40 % 327 395 22
30 % 1944 2285 2
Entity #24 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 47 472
95 % 24 53 582
90 % 24 53 609
70 % 24 53 635
50 % 315 367 38
40 % 315 367 48
30 % 1945 2285 2
Entity #25 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 43 557
95 % 24 54 579
90 % 24 54 605
70 % 24 54 630
50 % 24 54 673
40 % 24 54 708
30 % 24 54 732
Entity #26 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 45 458
95 % 25 54 479
90 % 25 54 504
70 % 25 54 534
50 % 61 99 336
40 % 63 101 339
30 % 1946 2285 2
Entity #27 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1852
95 % 2 18 2390
90 % 3 23 1953
70 % 3 23 2006
50 % 3 23 2050
40 % 3 23 2078
30 % 3 23 2108
Entity #28 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1856
95 % 2 18 2398
90 % 3 23 1960
70 % 3 23 2018
50 % 6 26 1755
40 % 6 26 1794
30 % 6 26 1823
Entity #29 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 558
95 % 24 53 577
90 % 24 53 603
70 % 24 53 628
50 % 311 359 45
40 % 316 365 50
30 % 316 365 51
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1942
95 % 1 32 2098
90 % 1 32 2141
70 % 1 32 2215
50 % 1 32 2256
40 % 6 56 1308
30 % 6 56 1347
Entity #30 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 43 559
95 % 24 53 583
90 % 24 53 610
70 % 24 53 627
50 % 24 53 672
40 % 313 362 55
30 % 315 364 53
Entity #31 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 2004
95 % 2 17 2585
90 % 3 22 2107
70 % 3 22 2179
50 % 4 23 2053
40 % 4 23 2084
30 % 4 23 2115
Entity #32 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1694
95 % 3 19 2210
90 % 4 24 1851
70 % 4 24 1900
50 % 4 24 1957
40 % 291 330 83
30 % 291 330 87
Entity #33 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1721
95 % 3 19 2203
90 % 4 24 1862
70 % 4 24 1911
50 % 4 24 1952
40 % 4 24 1986
30 % 4 24 2016
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1671
95 % 1 32 2147
90 % 1 32 2192
70 % 3 34 2120
50 % 3 34 2153
40 % 3 34 2182
30 % 3 34 2208
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1886
95 % 1 32 2115
90 % 1 32 2157
70 % 1 32 2206
50 % 1 32 2272
40 % 1 32 2299
30 % 6 56 1356
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3642
95 % 1 21 3558
90 % 1 21 3620
70 % 1 21 3623
50 % 1 21 3585
40 % 7 40 1852
30 % 7 40 1878
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 2148
95 % 1 32 2109
90 % 1 32 2171
70 % 1 32 2260
50 % 1 32 2264
40 % 1 32 2316
30 % 6 57 1337
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3608
95 % 1 21 3505
90 % 1 21 3617
70 % 1 21 3563
50 % 1 21 3517
40 % 1 21 3554
30 % 1 21 3480
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1672
95 % 1 32 2148
90 % 1 32 2193
70 % 1 32 2265
50 % 6 57 1269
40 % 6 57 1301
30 % 6 57 1343

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6Q00 1 A Ubiquitin 9606
2 6Q01 1 A, B Ubiquitin 9913
3 5TOG 1 A Polyubiquitin-B 9606
4 5NVG 1 A Polyubiquitin-B 9606
5 5TOF 1 A Polyubiquitin-B 9606
6 4XOF 1 A Ubiquitin 9606
7 3A9J 1 A Ubiquitin 10090
8 3A9J 2 B Ubiquitin 10090
9 5GOB 1 A Ubiquitin 9606
10 5GOB 2 B D-ubiquitin 9606
11 5W46 1 A, B Polyubiquitin-B 9606
12 5GOD 1 A, B Ubiquitin 9606
13 5GOD 2 C, D D-ubiquitin 9606
14 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
15 3NHE 2 B Ubiquitin 9606
16 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
17 1YJ1 1 A, B, C Ubiquitin residues 1-76 9606
18 6SQO 3 C, F Ubiquitin-40S ribosomal protein S27a GSGGS LINKER AT THE N-TERMINUS RESULTED FROM CLONING. G76 IN CHAINS C and F ARE COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAINS B AND E, RESPECTIVELY. 9606
19 5NL4 1 A, B, C Polyubiquitin-C 9606
20 5V1Y 2 C, D Ubiquitin 9606
21 4M0W 2 B Ubiquitin 9913
22 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
23 2GBJ 1 A, B Ubiquitin 9606
24 1YIW 1 A, B, C Ubiquitin 9606
25 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
26 2WWZ 1 A, B UBIQUITIN 9913
27 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
28 4IUM 2 B Ubiquitin UNP residues 1-75 9606
29 4GU2 1 A Ubiquitin 5759
30 3A9K 1 A Ubiquitin 10090
31 3A9K 2 B Ubiquitin 10090
32 4HK2 1 A, B, C, D Ubiquitin 9606
33 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
34 1XD3 2 B, D UBC protein 9606
35 5NLF 1 A, B, C Polyubiquitin-C 9606
36 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
37 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
38 4UN2 1 A UBIQUITIN 9606
39 5VBT 1 A, B UBH04 32630
40 4PIH 1 A, B Ubiquitin 9606
41 2ZCC 1 A, B, C Ubiquitin 9913
42 6NYO 2 E Ubiquitin 4896
43 4PIJ 1 A, B Ubiquitin 9606
44 5NLI 1 A, B, C Polyubiquitin-C 9606
45 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
46 5YT6 1 A, C, E, G Ubiquitin 9606
47 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
48 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
49 4FBJ 2 B NEDD8 9606
50 3BY4 2 B Ubiquitin 9606
51 6FDK 2 B Polyubiquitin-B 9606
52 5K9P 1 A Polyubiquitin-B 9606
53 5NLJ 1 A, B, C Polyubiquitin-B 9606
54 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
55 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
56 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
57 2ZNV 2 B, E Ubiquitin 10090
58 2ZNV 3 C, F Ubiquitin 10090
59 2GBM 1 A, B, C, D Ubiquitin 9606
60 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
61 5EMZ 1 A, C, E Polyubiquitin-B 9606
62 5EMZ 2 B, D, F Polyubiquitin-B 9606
63 6B7M 2 B, C Polyubiquitin-C 9606
64 6HEI 2 B Polyubiquitin-B 9606
65 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
66 2GBN 1 A Ubiquitin 9606
67 2ZCB 1 A, B, C Ubiquitin 9606
68 5OXI 1 A, B Ubiquitin L67S mutant 9606
69 4K1R 2 B, D Polyubiquitin-C 9606
70 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
71 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
72 4I6N 2 B, D Ubiquitin 9606
73 3V6C 2 B Ubiquitin 9606
74 5AF5 1 A POLYUBIQUITIN-C 9606
75 5J8P 1 A ubiquitin 9606
76 5J8P 2 B D-ubiquitin 9606
77 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
78 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
79 6EI1 2 B Polyubiquitin-B 9606
80 6FGE 2 C Polyubiquitin-B 9606
81 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
82 3NS8 1 A, B Ubiquitin 9606
83 5GOJ 1 A Ubiquitin 9606
84 5GOJ 2 B D-ubiquitin 9606
85 6OI4 2 C, D ubiquitin 9606
86 1UBI 1 A UBIQUITIN 9606
87 2D3G 1 A, B ubiquitin 9913
88 5GOC 1 A Ubiquitin 9606
89 5GOC 2 D D-ubiquitin 9606
90 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
91 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
92 5TXK 2 B Polyubiquitin-B 9606
93 5WFI 2 C, D Ubiquitin 9606
94 1UBQ 1 A UBIQUITIN 9606
95 6B7O 2 B, C Polyubiquitin-C 9606
96 4ZFR 2 B ubiquitin unp residues 77-152 9606
97 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
98 4HJK 1 A Ubiquitin UNP residues 87-162 9606
99 6GLC 2 B Polyubiquitin-B 9606
100 3N32 1 A Ubiquitin 9606
101 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
102 3ONS 1 A Ubiquitin 9606
103 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
104 3MHS 4 D Ubiquitin 9606
105 5M93 1 A, B, C Polyubiquitin-B 9606
106 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
107 2HD5 2 B Polyubiquitin residues 1-76 9913
108 5NMC 1 A, B, C Polyubiquitin-C 9606
109 5GOI 1 A, B Ubiquitin 9606
110 5GOI 2 C, D D-ubiquitin 9606
111 1WRD 2 B Ubiquitin 9913
112 5GVI 2 B ubiquitin 10090
113 5GVI 3 C ubiquitin 10090
114 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
115 2BKR 2 B NEDDYLIN 9606
116 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
117 2FCS 1 A, B Ubiquitin residues 1-76 9606
118 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
119 5V1Z 2 C, D Ubiquitin 9606
120 3ALB 1 A, B, C, D ubiquitin 9606
121 6GZS 2 B Polyubiquitin-B 9606
122 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
123 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
124 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
125 4PIG 1 A, B, C, D Ubiquitin 9606
126 5X3M 1 A Polyubiquitin-B 9606
127 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
128 5NL5 1 A, B, C Polyubiquitin-B 9606
129 6SQS 3 C, F Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C and F form a covalent bond with K85 sidechain in Chains B and E, respectively. 9606
130 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
131 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
132 4LDT 2 B Ubiquitin aldehyde 9606
133 4LDT 4 D Ubiquitin 9606
134 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
135 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
136 2QHO 1 A, C, E, G Ubiquitin 9913
137 3H7P 1 A Ubiquitin 9606
138 3H7P 2 B Ubiquitin 9606
139 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
140 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
141 5GO7 1 A Ubiquitin 9606
142 5GO7 2 B D-ubiquitin 9606
143 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
144 1P3Q 2 U, V Ubiquitin 9913
145 2OOB 2 B Ubiquitin 9913
146 5ULF 2 B, D Ubiquitin 9606
147 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
148 6ISU 2 B Ubiquitin 9606
149 6ISU 3 C Ubiquitin 9606
150 4F8C 2 B, D NEDD8 9606
151 6ULH 3 E Ubiquitin 9606
152 5ULH 2 B Ubiquitin 9606
153 3HM3 1 A, B, C, D Ubiquitin 9606
154 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
155 5GOK 1 A Ubiquitin 9606
156 5GOK 2 B D-ubiquitin 9606
157 4WLR 3 C Polyubiquitin-B 9606
158 3WWQ 1 A, D, G, J Ubiquitin 10090
159 3WWQ 2 B, E, H, K Ubiquitin 10090
160 5JG6 2 B, C Polyubiquitin-B 9606
161 3EFU 1 A Ubiquitin 9606
162 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
163 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
164 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
165 4IG7 2 B Ubiquitin 9606
166 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
167 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
168 5WVO 1 A, B Ubiquitin 9606
169 3V6E 2 B Ubiquitin 9606
170 1UZX 2 B UBIQUITIN 9913
171 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
172 1S1Q 2 B, D ubiquitin 9606
173 6NYA 2 B, E Ubiquitin residues 77-152 4565
174 6SQR 3 C, F, L Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C, F, L form a covalent bond with K85 sidechain in Chains B, E, K, respectively. 9606
175 6SQR 6 I Polyubiquitin-C Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chain I form a covalent bond with K85 sidechain in Chain H. 9606
176 6QML 2 B, E Polyubiquitin-B Met 1 substituted with Norleucine (NLE) 9606
177 6QML 3 C, F Polyubiquitin-C 9606
178 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
179 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
180 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
181 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
182 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
183 2GBR 1 A, B, C Ubiquitin 9606
184 4XKL 1 A, C Ubiquitin 9606
185 4FJV 2 B, D Polyubiquitin-C 9606
186 6P5B 3 E Ubiquitin 9606
187 5DFL 1 B Ubiquitin 9606
188 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
189 6UPU 2 B, C, D, F, G, H, J, K, L, N, O, P Ubiquitin 9606
190 5HPS 2 B Ubiquitin variant P1.1 9606
191 5GOH 1 A Ubiquitin 9606
192 5GOH 2 D D-ubiquitin 9606
193 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
194 2G45 2 B, E Ubiquitin 9606
195 6AQR 4 D Polyubiquitin-C 9606
196 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
197 5ZQ3 2 C, D Ubiquitin 9606
198 5ZQ4 2 C, D ubiquitin 9606
199 4GSW 1 A, B Ubiquitin 5759
200 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
201 1SIF 1 A ubiquitin 9606
202 5JBY 1 A, C, E ubiquitin 9606
203 5JBY 2 B, D, F D-ubiquitin 9606
204 5IFR 2 B Polyubiquitin-B 9606
205 2IBI 2 B Ubiquitin 9606
206 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
207 6D4P 2 C Ubiquitin Variant Ubv.D1.1 9606
208 6JB7 1 B Ubiquitin 9606
209 5GOG 1 A Ubiquitin 9606
210 5GOG 2 B D-ubiquitin 9606
211 2GBK 1 A, B, C, D Ubiquitin 9606
212 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
213 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
214 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
215 6DGF 2 B Polyubiquitin-B 9606
216 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
217 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
218 1XT9 2 B Neddylin 9606
219 1AAR 1 A, B DI-UBIQUITIN 9913
220 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
221 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
222 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
223 6OQ1 1 A, B Ubiquitin 9606
224 6OQ1 2 C, D Ubiquitin 9606
225 6OQ1 3 E, F Ubiquitin 9606
226 6RYA 2 B, D, F Polyubiquitin-C 9606
227 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
228 2WX0 1 A, B, E, F UBIQUITIN 9913
229 3A1Q 1 A, D Ubiquitin 10090
230 3A1Q 2 B, E Ubiquitin 10090
231 5HPL 2 C, D Ubiquitin variant R5.4 9606
232 5TR4 2 B, D Ubiquitin 9913
233 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
234 3H7S 1 A, B Ubiquitin 9606
235 3C0R 2 B, D Ubiquitin 9606
236 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
237 6PGV 2 B Polyubiquitin-B 9606
238 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
239 2C7M 2 B UBIQUITIN 9913
240 1TBE 1 A, B TETRAUBIQUITIN 9606
241 6NXK 1 A, B Polyubiquitin-C 9606
242 3PT2 2 B Ubiquitin B 9606
243 5VZW 2 C, D Ubiquitin 9606
244 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
245 6KG6 2 C Ubiquitin-40S ribosomal protein S27a 9606
246 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
247 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
248 5GO8 1 A ubiquitin 9606
249 5GO8 2 B D-ubiquitin 9606
250 3A33 2 B Ubiquitin 9606
251 3VHT 3 C Ubiquitin 10090
252 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
253 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
254 6ASR 1 A, C Ubiquitin residues 1-76 9606
255 2FCN 1 A, B Ubiquitin residues 1-76 9606
256 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
257 4DHJ 3 D, H Ubiquitin 9606
258 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
259 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
260 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
261 4NQL 2 B Ubiquitin 10090
262 4NQL 3 C Ubiquitin 10090
263 6NJG 2 C Polyubiquitin-B 9606
264 1NBF 2 C, D Ubiquitin aldehyde 9606
265 2O6V 1 A, C, E, G Ubiquitin 9606
266 2O6V 2 B, F Ubiquitin 9606
267 2O6V 3 D, H Ubiquitin 9606
268 3OFI 2 C, D Ubiquitin 9606
269 6UMS 3 E Ubiquitin 9606
270 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
271 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
272 5JBV 1 A Ubiquitin 9606
273 5JBV 2 B D-ubiquitin 9606
274 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
275 5X3O 2 D D-ubiquitin 9606
276 5ULK 2 B Ubiquitin 9606
277 5ZQ5 2 B, D Ubiquitin 9606
278 6FX4 2 B, D Polyubiquitin-B 9606
279 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
280 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
281 6D68 2 C, D Ubv.G1.1 9606
282 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
283 3IFW 2 B Ubiquitin 9606
284 3N3K 2 B Ubiquitin 9606
285 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
286 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
287 2FCM 1 A, B Ubiquitin residues 1-76 9606
288 6JWI 1 G, I Ubiqutin 10090
289 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
290 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
291 5HPK 2 B Ubiquitin variant NL.1 9606
292 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
293 3I3T 2 B, D, F, H Ubiquitin 9606
294 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
295 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
296 5OHK 2 B Polyubiquitin-B 9606
297 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
298 6JKY 3 C, F Ub 48269
299 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
300 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
301 4HCP 2 B NEDD8 unp residues 1-76 9606
302 3O65 2 B, D, F, H Ubiquitin 9606
303 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
304 6IF1 2 C, D Ubiquitin 9606
305 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
306 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
307 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
308 5XPK 1 A Ubiquitin 9606
309 5XPK 2 B D-ubiquitin 9606
310 5XDP 1 B D-ubiquitin 9606
311 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
312 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
313 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
314 5OHV 1 A, C Ubiquitin 9606
315 5KNL 2 B, E Ubiquitin 84753
316 4I6L 2 B Ubiquitin UNP residues 77-150 9606
317 5TUT 2 B Ubiquitin 9606
318 3OLM 2 D Ubiquitin 4932
319 3CMM 2 B, D Ubiquitin 559292
320 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
321 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
322 7BXG 3 D Polyubiquitin-C 9606
323 4MM3 1 A Ubiquitin UNP residues 1-76 9606
324 2FIF 1 A, C, E Ubiquitin 9913
325 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
326 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
327 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
328 2XBB 2 C, D UBIQUITIN 9913
329 2GMI 3 C Ubiquitin 9606
330 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
331 5J26 1 B Ubiquitin Variant i53 9606
332 6KL4 3 C Ub 446
333 3DVG 3 X Ubiquitin D77 9606
334 3DVG 4 Y Ubiquitin 9606
335 1WR6 2 E, F, G, H ubiquitin 9913
336 3LDZ 1 E, F, G Ubiquitin 9913
337 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
338 6BVA 3 A, B Polyubiquitin-B 9606
339 5ZQ7 2 B, D Ubiquitin 9606
340 3RUL 1 A, B, C, D Ubiquitin 9606
341 5BNB 2 E, F, G, I Polyubiquitin-B 9606
342 6K2U 1 B Polyubiquitin-C 9606
343 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
344 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
345 4XOK 1 A, B, C Ubiquitin 9606
346 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
347 5ZQ6 2 B, D Ubiquitin 9606
348 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
349 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
350 6S53 2 D, F, J, L Polyubiquitin-C 9606
351 3DVN 3 U, X Ubiquitin D77 9606
352 3DVN 4 V, Y Ubiquitin 9606
353 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
354 6KFP 3 D Ubiquitin-40S ribosomal protein S27a 9606
355 1F9J 1 A, B TETRAUBIQUITIN 9606
356 6BYH 3 C, D, H Polyubiquitin-B 9606
357 6NXL 1 A, B, C, D, E, F, G, H Polyubiquitin-B 9606
358 2FID 1 A Ubiquitin 9913
359 5OHP 2 B, C Polyubiquitin-B 9606
360 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
361 1YD8 1 U, V UBIQUIN 9913
362 4BOZ 2 B, C, E UBIQUITIN-C 9606
363 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
364 3WXG 2 B, E Ubiquitin 10090
365 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
366 6CP2 3 C Polyubiquitin-B 9606
367 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
368 3IHP 2 C, D Ubiquitin 9606
369 6D6I 3 C, F Ubv.V1.1 9606
370 5LN1 2 U Polyubiquitin-B 9606
371 3K9P 2 B Ubiquitin 9606
372 3DBH 3 I, J, K, L NEDD8 9606
373 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
374 6JB6 1 B Ubiquitin 9606
375 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
376 3JSV 1 A Ubiquitin 9606
377 3JSV 2 B Ubiquitin 9606
378 3DBL 3 I, J, K, L NEDD8 9606
379 3TBL 2 D, E Ubiquitin 9606
380 2HTH 1 A Ubiquitin 9606
381 3KW5 2 B Ubiquitin 9606
382 6EQI 1 A Ubiquitin 9606
383 5E6J 2 B, E ubiquitin 32630
384 5E6J 3 C, F Polyubiquitin-B 32630
385 2NVU 4 I, J NEDD8 9606
386 2XK5 1 A UBIQUITIN 9606
387 2XK5 2 B UBIQUITIN 9606
388 6OAM 2 C, D Ubiquitin 9606
389 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
390 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
391 3KVF 2 B Ubiquitin 9606
392 6FYH 2 B Polyubiquitin-B 9606
393 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
394 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
395 3H1U 1 A, B Ubiquitin 9913
396 6HEK 2 B, D Polyubiquitin-B 9606
397 5JTJ 2 B Polyubiquitin-B 9606
398 2WX1 1 A, B UBIQUITIN 9913
399 6UMP 1 E Ubiquitin 9606
400 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
401 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
402 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
403 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
404 6DC6 2 B, D Ubiquitin 9606
405 4XOL 1 A, B Ubiquitin 9606
406 5JP3 2 B, D, F, H Polyubiquitin-B 9606
407 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
408 3GZN 3 I, J NEDD8 9606
409 5O44 1 A, E Ubiquitin 7370
410 5O44 2 B, C Polyubiquitin-B 9606
411 5O44 3 D, F Polyubiquitin-B 9606
412 3PHD 2 E, F, G, H Polyubiquitin 9606
413 3DBR 3 I, J, K, L NEDD8 9606
414 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
415 5ZBU 3 E Ubiquitin 9606
416 3N30 1 A, B Ubiquitin 9606
417 4P5O 5 H, K NEDD8 9606
418 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
419 6W9D 3 C, F, I Ubiquitin Linked to Ube2d2 via isopeptide bond between G76 of ubiquitin and Lys85 of Ube2d2 9606
420 3JVZ 3 X, Y Ubiquitin 9606
421 4DHZ 2 B Ubiquitin aldehyde 9606
422 4DHZ 3 E Ubiquitin 9606
423 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
424 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
425 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
426 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
427 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
428 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
429 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
430 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
431 3JW0 3 X, Y Ubiquitin 9606
432 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
433 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
434 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
435 5JTV 2 B, D, F, H Polyubiquitin-B 9606
436 5OHN 2 B, D Polyubiquitin-B 9606
437 5TTE 3 F ubiquitin unp residues 1-76 4565
438 2FCQ 1 A, B Ubiquitin residues 1-76 9606
439 3EEC 1 A, B Ubiquitin 9606
440 5VNZ 3 C, F Ubiquitin 9606
441 6H4H 2 C, D Polyubiquitin-B 9606
442 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
443 6C16 3 D, H Polyubiquitin-B 9606
444 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
445 5H7S 1 E, F Ubiquitin-like 1 9606
446 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
447 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
448 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
449 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
450 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
451 2DX5 2 B Ubiquitin 9913
452 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
453 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
454 5VO0 3 C, F Ubiquitin 9606
455 6DJW 2 B Ubiquitin 9913
456 2AYO 2 B Ubiquitin 9606
457 5KHY 1 A Polyubiquitin-B 9606
458 5KHY 2 B Polyubiquitin-B 9606
459 6DJX 2 B Ubiquitin 9913
460 4JIO 2 U Ubiquitin 9606
461 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
462 6VEN 7 K Ubiquitin 9606
463 6TTU 4 N NEDD8 Residue 1, Ser, comes from the linker. NEDD8 residue starts from MET. 9606
464 6TTU 7 U Polyubiquitin-C 9606
465 6VAE 3 C, D Ubiquitin isopeptide bond between C-terminus of ubiquitin (chain C) and Lys523 Nz of FANCI (chain A); isopeptide bond between C-terminus of ubiquitin (chain D) and Lys561 Nz of FANCD2 (chain B) 9606
466 6VAF 3 D Ubiquitin 9606
467 6TNF 3 C Polyubiquitin-C 9606
468 6V5D 1 A Ubiquitin 9606
469 6UYI 1 C Ubiquitin 9606
470 6UYI 2 D Ubiquitin 9606
471 6UYJ 1 C Ubiquitin 9606
472 6UYJ 2 D Ubiquitin 9606
473 6TBM 15 R Polyubiquitin-B 9606
474 6T9L 12 O Polyubiquitin-C 9606
475 6UH5 11 Q Ubiquitin 9606
476 6KOW 1 A Polyubiquitin-B 9606
477 6KOX 1 A Polyubiquitin-B 9606
478 6KIU 11 O Ubiquitin 9606
479 6KIV 9 O Ubiquitin 9606
480 6KIW 9 O Ubiquitin 9606
481 6K4I 1 A ubiquitin 9606
482 6OQ2 1 B Ubiquitin 9606
483 6OQ2 2 D Ubiquitin 9606
484 6OQ2 3 E Ubiquitin 9606
485 6R7F 14 N NEDD8 9606
486 6R7I 9 N NEDD8 9606
487 6OB1 1 A Ubiquitin 9606
488 6OB1 2 B Ubiquitin 9606
489 6OA9 2 H, J, K Ubiquitin 4932
490 6OAA 3 H Ubiquitin 4932
491 6O96 8 L Polyubiquitin-B 9606
492 6JMA 7 Y Ubiquitin 9606
493 6J99 7 L Ubiquitin 9606
494 6NQA 7 L Ubiquitin 9606
495 6NOG 5 L Ubiquitin 9606
496 6NN6 8 L Ubiquitin 9606
497 6QF8 1 A Polyubiquitin-B 9606
498 6NJ9 5 L Ubiquitin 9606
499 6N13 2 D ubiquitin 9606
500 6N13 4 A phosphoubiquitin 9606
501 6MSB 19 u, w Ubiquitin 9606
502 6MSD 19 u, w Ubiquitin 9606
503 6MSE 19 u Ubiquitin 9606
504 6MSG 19 u Ubiquitin 9606
505 6FTX 8 N, O Polyubiquitin-B 9606
506 5ZD0 1 A ubiquitin 9606
507 5YMY 1 A Ubiquitin 9606
508 5YMY 2 B Ubiquitin 9606
509 5VZM 1 A Ubiquitin UNP residues 1-76 9606
510 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
511 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
512 5VEY 2 B Polyubiquitin-B 9606
513 5VF0 1 A Polyubiquitin-B 9606
514 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
515 5UJL 1 A, B Ubiquitin residues 1-76 9606
516 5UJN 1 A, B Ubiquitin 9606
517 5GO0 1 A Ubiquitin, putative 5691
518 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
519 5KGF 8 M, O Ubiquitin 9606
520 2NBD 1 A entity 9606
521 2NBE 1 A entity 9606
522 2N7K 1 A NEDD8 9606
523 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
524 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
525 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
526 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
527 2N2K 1 A ubiquitin 9606
528 2N2K 2 B ubiquitin 9606
529 2N13 2 B Ubiquitin 9606
530 2N13 3 C Ubiquitin 9606
531 2MWS 1 A Ubiquitin UNP residues 1-76 9606
532 2MUR 2 B Ubiquitin 9606
533 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
534 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
535 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
536 2MOR 1 A Ubiquitin UNP residues 1-76 9606
537 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
538 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
539 2MI8 1 A Ubiquitin 9606
540 2RU6 1 A Ubiquitin 9606
541 2MCN 2 B Ubiquitin UNP residues 1-76 9606
542 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
543 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
544 2MBH 2 A Ubiquitin 9606
545 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
546 2M0X 1 A engineered ubiquitin variant 9606
547 2LZ6 1 A Ubiquitin 9606
548 2LVO 1 A Ubiquitin 9606
549 2LVP 1 A, B Ubiquitin 9606
550 2LVQ 1 A, B Ubiquitin 9606
551 2RSU 1 A Ubiquitin 9606
552 2LRW 1 A Ubiquitin, putative 185431
553 2LJ5 1 A Ubiquitin 9606
554 2LD9 1 A Ubiquitin 9606
555 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
556 2L0T 1 A Ubiquitin 9606
557 2L0F 1 A Ubiquitin 9606
558 2L00 2 B Ubiquitin ubiquitin core domain 4932
559 2RR9 1 A, B ubiquitin 9606
560 2KWV 2 B Ubiquitin 9606
561 2KWU 2 B Ubiquitin 9606
562 2KTF 1 A Ubiquitin 9606
563 2KOX 1 A Ubiquitin 9606
564 2KO3 1 A NEDD8 9606
565 2KN5 1 A Ubiquitin 9606
566 2KLG 1 A Ubiquitin 9606
567 2KJH 2 B Ubiquitin 9606
568 2KHW 2 B Ubiquitin 9606
569 2KDE 2 B, C Ubiquitin 8355
570 2KDF 2 B, C Ubiquitin 9606
571 2K8B 1 A Ubiquitin 9606
572 2K8C 1 A Ubiquitin 9606
573 2K6D 2 B Ubiquitin ubiquitin 9606
574 2K39 1 A Ubiquitin 8355
575 2JZZ 1 A Ubiquitin 9606
576 2JY6 1 A Ubiquitin protein 9606
577 2JWZ 1 A Ubiquitin 4932
578 2JVC 1 A ubiquitin_like protein
579 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
580 2Z59 2 B Ubiquitin 9606
581 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
582 2PE9 1 A, B Ubiquitin 9606
583 2PEA 1 A, B Ubiquitin 9606
584 2NR2 1 A Ubiquitin 9606
585 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
586 2G3Q 2 B Ubiquitin 4932
587 2DEN 2 B Polyubiquitin-B 9606
588 2FUH 2 B Ubiquitin Ubiquitin 10116
589 1ZW7 1 A Ubiquitin 4932
590 1ZGU 2 B Ubiquitin 9606
591 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
592 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
593 1XQQ 1 A ubiquitin 9606
594 1WR1 1 A Ubiquitin 4932
595 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
596 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
597 1Q5W 2 B Ubiquitin 9606
598 1Q0W 2 B Ubiquitin 4932
599 1OTR 2 B Ubiquitin 4932
600 1G6J 1 A UBIQUITIN 9606
601 1FXT 2 B UBIQUITIN 9606
602 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
603 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
604 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
605 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702