6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Sequence Similarity Clusters for the Entities in PDB 6MSB

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1867
95 % 1 31 2051
90 % 1 31 2125
70 % 1 32 2081
50 % 1 32 2131
40 % 7 56 1209
30 % 7 56 1254
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 3868
95 % 1 16 4552
90 % 1 20 3646
70 % 1 20 3772
50 % 1 20 3695
40 % 1 20 3694
30 % 1 20 3606
Entity #11 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 33 1386
95 % 5 33 1864
90 % 5 33 1908
70 % 5 33 1955
50 % 5 35 1870
40 % 5 35 1915
30 % 5 35 1939
Entity #12 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 29 1736
95 % 1 33 1946
90 % 1 33 1986
70 % 1 30 2339
50 % 1 30 2359
40 % 6 53 1312
30 % 6 53 1352
Entity #13 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2668
95 % 1 25 2644
90 % 1 25 2700
70 % 6 49 1339
50 % 6 49 1363
40 % 6 49 1417
30 % 6 49 1445
Entity #14 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2643
95 % 1 21 3298
90 % 1 21 3371
70 % 6 39 1678
50 % 6 39 1713
40 % 6 39 1766
30 % 6 39 1784
Entity #15 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 30 1634
95 % 1 30 2117
90 % 1 30 2249
70 % 6 55 1186
50 % 6 77 566
40 % 11 147 366
30 % 11 147 379
Entity #16 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1902
95 % 1 31 2057
90 % 1 31 2104
70 % 1 31 2197
50 % 6 55 1214
40 % 6 55 1253
30 % 11 101 673
Entity #17 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 6969
95 % 1 31 2095
90 % 1 31 2137
70 % 1 31 2201
50 % 6 49 1359
40 % 12 147 366
30 % 12 147 379
Entity #18 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1897
95 % 1 22 3045
90 % 1 22 3313
70 % 1 22 3339
50 % 6 46 1453
40 % 6 46 1521
30 % 12 101 673
Entity #19 | Chains: u,w
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1477
95 % 394 485 6
90 % 402 498 6
70 % 451 548 9
50 % 463 563 11
40 % 463 567 14
30 % 473 583 20
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1889
95 % 1 31 2090
90 % 1 31 2131
70 % 1 31 2195
50 % 1 31 2241
40 % 1 31 2280
30 % 1 31 2287
Entity #20 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 48 475
95 % 22 52 550
90 % 22 52 576
70 % 22 52 610
50 % 309 361 42
40 % 314 367 42
30 % 1929 2273 2
Entity #21 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 494
95 % 22 51 554
90 % 22 51 580
70 % 22 51 612
50 % 25 55 593
40 % 314 366 43
30 % 1930 2273 2
Entity #22 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 496
95 % 22 51 559
90 % 22 51 585
70 % 22 51 619
50 % 312 364 38
40 % 314 366 44
30 % 1931 2273 2
Entity #23 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 517
95 % 22 52 551
90 % 22 52 577
70 % 22 52 615
50 % 311 363 39
40 % 325 393 17
30 % 1932 2273 2
Entity #24 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 46 442
95 % 22 51 552
90 % 22 51 578
70 % 22 51 611
50 % 313 365 37
40 % 313 365 45
30 % 1933 2273 2
Entity #25 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 525
95 % 22 52 547
90 % 22 52 586
70 % 22 52 622
50 % 22 52 647
40 % 22 52 684
30 % 22 52 713
Entity #26 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 422
95 % 23 52 453
90 % 23 52 487
70 % 23 52 522
50 % 59 97 313
40 % 61 99 314
30 % 1934 2273 2
Entity #27 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1873
95 % 1 17 2463
90 % 1 21 2138
70 % 1 21 2202
50 % 1 21 2248
40 % 1 21 2282
30 % 1 21 2290
Entity #28 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1874
95 % 1 17 2460
90 % 1 21 2139
70 % 1 21 2203
50 % 4 24 1821
40 % 4 24 1872
30 % 4 24 1895
Entity #29 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 42 515
95 % 22 51 557
90 % 22 51 582
70 % 22 51 613
50 % 309 357 43
40 % 314 363 46
30 % 314 363 48
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1803
95 % 1 32 2037
90 % 1 32 2086
70 % 1 32 2150
50 % 1 32 2190
40 % 6 56 1233
30 % 6 56 1276
Entity #30 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 522
95 % 22 51 558
90 % 22 51 574
70 % 22 51 614
50 % 22 51 650
40 % 311 360 47
30 % 313 362 49
Entity #31 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 2087
95 % 1 16 2650
90 % 1 20 2282
70 % 1 20 2364
50 % 2 21 2207
40 % 2 21 2241
30 % 2 21 2250
Entity #32 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1716
95 % 2 18 2230
90 % 2 22 1956
70 % 2 22 2004
50 % 2 22 2048
40 % 289 328 77
30 % 289 328 81
Entity #33 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1735
95 % 2 18 2262
90 % 2 22 1995
70 % 2 22 2021
50 % 2 22 2077
40 % 2 22 2128
30 % 2 22 2150
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1518
95 % 1 32 2001
90 % 1 32 2041
70 % 3 34 1984
50 % 3 34 1986
40 % 3 34 2052
30 % 3 34 2069
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1748
95 % 1 32 1969
90 % 1 32 2013
70 % 1 32 2069
50 % 1 32 2115
40 % 1 32 2167
30 % 6 56 1267
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3355
95 % 1 21 3312
90 % 1 21 3387
70 % 1 21 3406
50 % 1 21 3351
40 % 7 40 1734
30 % 7 40 1760
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1931
95 % 1 32 1970
90 % 1 32 2014
70 % 1 32 2070
50 % 1 32 2116
40 % 1 32 2168
30 % 6 57 1247
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3339
95 % 1 21 3284
90 % 1 21 3358
70 % 1 21 3370
50 % 1 21 3318
40 % 1 21 3305
30 % 1 21 3246
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1520
95 % 1 32 2013
90 % 1 32 2053
70 % 1 32 2118
50 % 6 57 1178
40 % 6 57 1215
30 % 6 57 1256

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NVG 1 A Polyubiquitin-B 9606
2 4XOF 1 A Ubiquitin 9606
3 3A9J 1 A Ubiquitin 10090
4 3A9J 2 B Ubiquitin 10090
5 5GOB 1 A Ubiquitin 9606
6 5GOB 2 B D-ubiquitin 9606
7 5W46 1 A, B Polyubiquitin-B 9606
8 5GOD 1 A, B Ubiquitin 9606
9 5GOD 2 C, D D-ubiquitin 9606
10 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
11 3NHE 2 B Ubiquitin 9606
12 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
13 1YJ1 1 A, B, C Ubiquitin residues 1-76
14 5NL4 1 A, B, C Polyubiquitin-C 9606
15 5V1Y 2 C, D Ubiquitin 9606
16 4M0W 2 B Ubiquitin 9913
17 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
18 2GBJ 1 A, B Ubiquitin 9606
19 1YIW 1 A, B, C Ubiquitin 9031
20 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
21 2WWZ 1 A, B UBIQUITIN 9913
22 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
23 4IUM 2 B Ubiquitin UNP residues 1-75 9606
24 3A9K 1 A Ubiquitin 10090
25 3A9K 2 B Ubiquitin 10090
26 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
27 1XD3 2 B, D UBC protein 9606
28 5NLF 1 A, B, C Polyubiquitin-C 9606
29 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
30 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
31 4UN2 1 A UBIQUITIN 9606
32 4PIH 1 A, B Ubiquitin 9606
33 2ZCC 1 A, B, C Ubiquitin 9913
34 4PIJ 1 A, B Ubiquitin 9606
35 5NLI 1 A, B, C Polyubiquitin-C 9606
36 5YT6 1 A, C, E, G Ubiquitin 9606
37 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
38 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
39 3BY4 2 B Ubiquitin 9606
40 6FDK 2 B Polyubiquitin-B 9606
41 5K9P 1 A Polyubiquitin-B 9606
42 5NLJ 1 A, B, C Polyubiquitin-B 9606
43 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
44 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
45 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
46 2ZNV 2 B, E Ubiquitin 10090
47 2ZNV 3 C, F Ubiquitin 10090
48 2GBM 1 A, B, C, D Ubiquitin 9606
49 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
50 5EMZ 1 A, C, E Polyubiquitin-B 9606
51 5EMZ 2 B, D, F Polyubiquitin-B 9606
52 6B7M 2 B, C Polyubiquitin-C 9606
53 6HEI 2 B Polyubiquitin-B 9606
54 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
55 2GBN 1 A Ubiquitin 9606
56 2ZCB 1 A, B, C Ubiquitin 9606
57 5OXI 1 A, B Ubiquitin L67S mutant 9606
58 4K1R 2 B, D Polyubiquitin-C 9606
59 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
60 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
61 4I6N 2 B, D Ubiquitin 9606
62 5AF5 1 A POLYUBIQUITIN-C 9606
63 5J8P 1 A ubiquitin 9606
64 5J8P 2 B D-ubiquitin 9606
65 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
66 6EI1 2 B Polyubiquitin-B 9606
67 6FGE 2 C Polyubiquitin-B 9606
68 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
69 3NS8 1 A, B Ubiquitin 9606
70 5GOJ 1 A Ubiquitin 9606
71 5GOJ 2 B D-ubiquitin 9606
72 6OI4 2 C, D ubiquitin 9606
73 1UBI 1 A UBIQUITIN 9606
74 2D3G 1 A, B ubiquitin 9913
75 5GOC 1 A Ubiquitin 9606
76 5GOC 2 D D-ubiquitin 9606
77 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
78 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
79 5TXK 2 B Polyubiquitin-B 9606
80 5WFI 2 C, D Ubiquitin 9606
81 1UBQ 1 A UBIQUITIN 9606
82 6B7O 2 B, C Polyubiquitin-C 9606
83 4ZFR 2 B ubiquitin unp residues 77-152 9606
84 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
85 4HJK 1 A Ubiquitin UNP residues 87-162 9606
86 6GLC 2 B Polyubiquitin-B 9606
87 3N32 1 A Ubiquitin 9606
88 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
89 3ONS 1 A Ubiquitin 9606
90 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
91 3MHS 4 D Ubiquitin 9606
92 5M93 1 A, B, C Polyubiquitin-B 9606
93 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
94 2HD5 2 B Polyubiquitin residues 1-76 9913
95 5NMC 1 A, B, C Polyubiquitin-C 9606
96 5GOI 1 A, B Ubiquitin 9606
97 5GOI 2 C, D D-ubiquitin 9606
98 1WRD 2 B Ubiquitin 9913
99 5GVI 2 B ubiquitin 10090
100 5GVI 3 C ubiquitin 10090
101 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
102 2FCS 1 A, B Ubiquitin residues 1-76
103 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
104 5V1Z 2 C, D Ubiquitin 9606
105 3ALB 1 A, B, C, D ubiquitin 9606
106 6GZS 2 B Polyubiquitin-B 9606
107 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
108 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
109 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
110 4PIG 1 A, B, C, D Ubiquitin 9606
111 5X3M 1 A Polyubiquitin-B 9606
112 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
113 5NL5 1 A, B, C Polyubiquitin-B 9606
114 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
115 4LDT 2 B Ubiquitin aldehyde 9606
116 4LDT 4 D Ubiquitin 9606
117 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
118 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
119 2QHO 1 A, C, E, G Ubiquitin 9913
120 3H7P 1 A Ubiquitin 9606
121 3H7P 2 B Ubiquitin 9606
122 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
123 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
124 5GO7 1 A Ubiquitin 9606
125 5GO7 2 B D-ubiquitin 9606
126 1P3Q 2 U, V Ubiquitin 9913
127 2OOB 2 B Ubiquitin 9913
128 5ULF 2 B, D Ubiquitin 9606
129 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
130 6ISU 2 B Ubiquitin 9606
131 6ISU 3 C Ubiquitin 9606
132 5ULH 2 B Ubiquitin 9606
133 3HM3 1 A, B, C, D Ubiquitin 9606
134 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
135 5GOK 1 A Ubiquitin 9606
136 5GOK 2 B D-ubiquitin 9606
137 4WLR 3 C Polyubiquitin-B 9606
138 3WWQ 1 A, D, G, J Ubiquitin 10090
139 3WWQ 2 B, E, H, K Ubiquitin 10090
140 3EFU 1 A Ubiquitin 9606
141 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
142 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
143 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
144 4IG7 2 B Ubiquitin 9606
145 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
146 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
147 5WVO 1 A, B Ubiquitin 9606
148 1UZX 2 B UBIQUITIN 9913
149 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
150 1S1Q 2 B, D ubiquitin 9606
151 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
152 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
153 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
154 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
155 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
156 2GBR 1 A, B, C Ubiquitin 9606
157 4XKL 1 A, C Ubiquitin 9606
158 4FJV 2 B, D Polyubiquitin-C 9606
159 5DFL 1 B Ubiquitin 9606
160 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
161 5GOH 1 A Ubiquitin 9606
162 5GOH 2 D D-ubiquitin 9606
163 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
164 2G45 2 B, E Ubiquitin 9606
165 6AQR 4 D Polyubiquitin-C 9606
166 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
167 5ZQ3 2 C, D Ubiquitin 9606
168 5ZQ4 2 C, D ubiquitin 9606
169 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
170 5JBY 1 A, C, E ubiquitin 9606
171 5JBY 2 B, D, F D-ubiquitin 9606
172 5IFR 2 B Polyubiquitin-B 9606
173 2IBI 2 B Ubiquitin 9606
174 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
175 6JB7 1 B Ubiquitin 9606
176 5GOG 1 A Ubiquitin 9606
177 5GOG 2 B D-ubiquitin 9606
178 2GBK 1 A, B, C, D Ubiquitin 9606
179 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
180 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
181 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
182 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
183 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
184 1AAR 1 A, B DI-UBIQUITIN 9913
185 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
186 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
187 6OQ1 1 A, B Ubiquitin 9606
188 6OQ1 2 C, D Ubiquitin 9606
189 6OQ1 3 E, F Ubiquitin 9606
190 6RYA 2 B, D, F Polyubiquitin-C 9606
191 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
192 2WX0 1 A, B, E, F UBIQUITIN 9913
193 3A1Q 1 A, D Ubiquitin 10090
194 3A1Q 2 B, E Ubiquitin 10090
195 5HPL 2 C, D Ubiquitin variant R5.4 9606
196 5TR4 2 B, D Ubiquitin 9913
197 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
198 3H7S 1 A, B Ubiquitin 9606
199 3C0R 2 B, D Ubiquitin 9606
200 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
201 6PGV 2 B Polyubiquitin-B 9606
202 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
203 2C7M 2 B UBIQUITIN 9913
204 1TBE 1 A, B TETRAUBIQUITIN 9606
205 3PT2 2 B Ubiquitin B 9606
206 5VZW 2 C, D Ubiquitin 9606
207 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
208 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
209 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
210 5GO8 1 A ubiquitin 9606
211 5GO8 2 B D-ubiquitin 9606
212 3A33 2 B Ubiquitin 9606
213 3VHT 3 C Ubiquitin 10090
214 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
215 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
216 6ASR 1 A, C Ubiquitin residues 1-76 9606
217 2FCN 1 A, B Ubiquitin residues 1-76
218 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
219 4DHJ 3 D, H Ubiquitin 9606
220 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
221 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
222 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
223 4NQL 2 B Ubiquitin 10090
224 4NQL 3 C Ubiquitin 10090
225 1NBF 2 C, D Ubiquitin aldehyde 9606
226 2O6V 1 A, C, E, G Ubiquitin 9606
227 2O6V 2 B, F Ubiquitin 9606
228 2O6V 3 D, H Ubiquitin 9606
229 3OFI 2 C, D Ubiquitin 9606
230 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
231 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
232 5JBV 1 A Ubiquitin 9606
233 5JBV 2 B D-ubiquitin 9606
234 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
235 5X3O 2 D D-ubiquitin 9606
236 5ULK 2 B Ubiquitin 9606
237 5ZQ5 2 B, D Ubiquitin 9606
238 6FX4 2 B, D Polyubiquitin-B 9606
239 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
240 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
241 3IFW 2 B Ubiquitin 9606
242 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
243 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
244 2FCM 1 A, B Ubiquitin residues 1-76
245 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
246 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
247 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
248 3I3T 2 B, D, F, H Ubiquitin 9606
249 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
250 5OHK 2 B Polyubiquitin-B 9606
251 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
252 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
253 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
254 3O65 2 B, D, F, H Ubiquitin 9606
255 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
256 6IF1 2 C, D Ubiquitin 9606
257 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
258 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
259 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
260 5XPK 1 A Ubiquitin 9606
261 5XPK 2 B D-ubiquitin 9606
262 5XDP 1 B D-ubiquitin 9606
263 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
264 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
265 5OHV 1 A, C Ubiquitin 9606
266 4I6L 2 B Ubiquitin UNP residues 77-150 9606
267 5TUT 2 B Ubiquitin 9606
268 3OLM 2 D Ubiquitin 4932
269 3CMM 2 B, D Ubiquitin 559292
270 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
271 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
272 4MM3 1 A Ubiquitin UNP residues 1-76 9606
273 2FIF 1 A, C, E Ubiquitin 9913
274 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
275 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
276 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
277 2XBB 2 C, D UBIQUITIN 9913
278 2GMI 3 C Ubiquitin 9606
279 5J26 1 B Ubiquitin Variant i53 9606
280 3DVG 3 X Ubiquitin D77 9606
281 3DVG 4 Y Ubiquitin 9606
282 1WR6 2 E, F, G, H ubiquitin 9913
283 3LDZ 1 E, F, G Ubiquitin 9913
284 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
285 5ZQ7 2 B, D Ubiquitin 9606
286 3RUL 1 A, B, C, D Ubiquitin 9606
287 5BNB 2 E, F, G, I Polyubiquitin-B 9606
288 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
289 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
290 4XOK 1 A, B, C Ubiquitin 9606
291 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
292 5ZQ6 2 B, D Ubiquitin 9606
293 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
294 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
295 6S53 2 D, F, J, L Polyubiquitin-C 9606
296 3DVN 3 U, X Ubiquitin D77 9606
297 3DVN 4 V, Y Ubiquitin 9606
298 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
299 1F9J 1 A, B TETRAUBIQUITIN 9606
300 2FID 1 A Ubiquitin 9913
301 5OHP 2 B, C Polyubiquitin-B 9606
302 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
303 1YD8 1 U, V UBIQUIN 9913
304 4BOZ 2 B, C, E UBIQUITIN-C 9606
305 3WXG 2 B, E Ubiquitin 10090
306 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
307 6CP2 3 C Polyubiquitin-B 9606
308 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
309 3IHP 2 C, D Ubiquitin 9606
310 5LN1 2 U Polyubiquitin-B 9606
311 3K9P 2 B Ubiquitin 9606
312 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
313 6JB6 1 B Ubiquitin 9606
314 3JSV 1 A Ubiquitin 9606
315 3JSV 2 B Ubiquitin 9606
316 3TBL 2 D, E Ubiquitin 9606
317 2HTH 1 A Ubiquitin 9606
318 3KW5 2 B Ubiquitin 9606
319 6EQI 1 A Ubiquitin 9606
320 5E6J 2 B, E ubiquitin 32630
321 5E6J 3 C, F Polyubiquitin-B 32630
322 2XK5 1 A UBIQUITIN 9606
323 2XK5 2 B UBIQUITIN 9606
324 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
325 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
326 3KVF 2 B Ubiquitin 9606
327 6FYH 2 B Polyubiquitin-B 9606
328 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
329 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
330 3H1U 1 A, B Ubiquitin 9913
331 6HEK 2 B, D Polyubiquitin-B 9606
332 5JTJ 2 B Polyubiquitin-B 9606
333 2WX1 1 A, B UBIQUITIN 9913
334 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
335 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
336 6DC6 2 B, D Ubiquitin 9606
337 4XOL 1 A, B Ubiquitin 9606
338 5JP3 2 B, D, F, H Polyubiquitin-B 9606
339 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
340 5O44 1 A, E Ubiquitin 7370
341 5O44 2 B, C Polyubiquitin-B 9606
342 5O44 3 D, F Polyubiquitin-B 9606
343 3PHD 2 E, F, G, H Polyubiquitin 9606
344 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
345 5ZBU 3 E Ubiquitin 9606
346 3N30 1 A, B Ubiquitin 9606
347 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
348 3JVZ 3 X, Y Ubiquitin 9606
349 4DHZ 2 B Ubiquitin aldehyde 9606
350 4DHZ 3 E Ubiquitin 9606
351 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
352 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
353 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
354 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
355 3JW0 3 X, Y Ubiquitin 9606
356 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
357 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
358 5JTV 2 B, D, F, H Polyubiquitin-B 9606
359 5OHN 2 B, D Polyubiquitin-B 9606
360 2FCQ 1 A, B Ubiquitin residues 1-76 9031
361 3EEC 1 A, B Ubiquitin 9606
362 5VNZ 3 C, F Ubiquitin 9606
363 6H4H 2 C, D Polyubiquitin-B 9606
364 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
365 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
366 5H7S 1 E, F Ubiquitin-like 1 9606
367 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
368 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
369 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
370 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
371 2DX5 2 B Ubiquitin 9913
372 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
373 5VO0 3 C, F Ubiquitin 9606
374 6DJW 2 B Ubiquitin 9913
375 2AYO 2 B Ubiquitin 9606
376 5KHY 1 A Polyubiquitin-B 9606
377 5KHY 2 B Polyubiquitin-B 9606
378 6DJX 2 B Ubiquitin 9913
379 4JIO 2 U Ubiquitin 9606
380 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
381 6KOW 1 A Polyubiquitin-B 9606
382 6KOX 1 A Polyubiquitin-B 9606
383 6KIU 11 O Ubiquitin 9606
384 6KIV 9 O Ubiquitin 9606
385 6KIW 9 O Ubiquitin 9606
386 6K4I 1 A ubiquitin 9606
387 6OQ2 1 B Ubiquitin 9606
388 6OQ2 2 D Ubiquitin 9606
389 6OQ2 3 E Ubiquitin 9606
390 6OA9 2 H, J, K Ubiquitin 4932
391 6OAA 3 H Ubiquitin 4932
392 6O96 8 L Polyubiquitin-B 9606
393 6JMA 7 Y Ubiquitin 9606
394 6J99 7 L Ubiquitin 9606
395 6NQA 7 L Ubiquitin 9606
396 6NOG 5 L Ubiquitin 9606
397 6NN6 8 L Ubiquitin 9606
398 6QF8 1 A Polyubiquitin-B 9606
399 6NJ9 5 L Ubiquitin 9606
400 6N13 2 D ubiquitin 9606
401 6N13 4 A phosphoubiquitin 9606
402 6MSB 19 u, w Ubiquitin 9606
403 6MSD 19 u, w Ubiquitin 9606
404 6MSE 19 u Ubiquitin 9606
405 6MSG 19 u Ubiquitin 9606
406 6FTX 8 N, O Polyubiquitin-B 9606
407 5ZD0 1 A ubiquitin 9606
408 5YMY 1 A Ubiquitin 9606
409 5YMY 2 B Ubiquitin 9606
410 5VZM 1 A Ubiquitin UNP residues 1-76 9606
411 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
412 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
413 5VEY 2 B Polyubiquitin-B 9606
414 5VF0 1 A Polyubiquitin-B 9606
415 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
416 5UJL 1 A, B Ubiquitin residues 1-76 9606
417 5UJN 1 A, B Ubiquitin 9606
418 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
419 5KGF 8 M, O Ubiquitin 9606
420 2NBD 1 A entity 9606
421 2NBE 1 A entity 9606
422 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
423 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
424 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
425 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
426 2N2K 1 A ubiquitin 9606
427 2N2K 2 B ubiquitin 9606
428 2N13 2 B Ubiquitin 9606
429 2N13 3 C Ubiquitin 9606
430 2MWS 1 A Ubiquitin UNP residues 1-76 9606
431 2MUR 2 B Ubiquitin 9606
432 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
433 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
434 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
435 2MOR 1 A Ubiquitin UNP residues 1-76 9606
436 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
437 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
438 2MI8 1 A Ubiquitin 9606
439 2RU6 1 A Ubiquitin 9606
440 2MCN 2 B Ubiquitin UNP residues 1-76 9606
441 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
442 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
443 2MBH 2 A Ubiquitin 9606
444 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
445 2M0X 1 A engineered ubiquitin variant 9606
446 2LZ6 1 A Ubiquitin 9606
447 2LVO 1 A Ubiquitin 9606
448 2LVP 1 A, B Ubiquitin 9606
449 2LVQ 1 A, B Ubiquitin 9606
450 2RSU 1 A Ubiquitin 9606
451 2LJ5 1 A Ubiquitin 9606
452 2LD9 1 A Ubiquitin 9606
453 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
454 2L0T 1 A Ubiquitin 9606
455 2L0F 1 A Ubiquitin 9606
456 2L00 2 B Ubiquitin ubiquitin core domain 4932
457 2RR9 1 A, B ubiquitin 9606
458 2KWV 2 B Ubiquitin 9606
459 2KWU 2 B Ubiquitin 9606
460 2KTF 1 A Ubiquitin 9606
461 2KOX 1 A Ubiquitin 9606
462 2KN5 1 A Ubiquitin 9606
463 2KLG 1 A Ubiquitin 9606
464 2KJH 2 B Ubiquitin 9606
465 2KHW 2 B Ubiquitin 9606
466 2KDE 2 B, C Ubiquitin 8355
467 2KDF 2 B, C Ubiquitin 9606
468 2K8B 1 A Ubiquitin 9606
469 2K8C 1 A Ubiquitin 9606
470 2K6D 2 B Ubiquitin ubiquitin 9606
471 2K39 1 A Ubiquitin 8355
472 2JZZ 1 A Ubiquitin 9606
473 2JY6 1 A Ubiquitin protein 9606
474 2JWZ 1 A Ubiquitin 4932
475 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
476 2Z59 2 B Ubiquitin 9606
477 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
478 2PE9 1 A, B Ubiquitin 9606
479 2PEA 1 A, B Ubiquitin 9606
480 2NR2 1 A Ubiquitin 9606
481 2G3Q 2 B Ubiquitin 4932
482 2DEN 2 B Ubiquitin 9606
483 2FUH 2 B Ubiquitin Ubiquitin 10116
484 1ZW7 1 A Ubiquitin 4932
485 1ZGU 2 B Ubiquitin 9606
486 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
487 1XQQ 1 A ubiquitin 9606
488 1WR1 1 A Ubiquitin 4932
489 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
490 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
491 1Q5W 2 B Ubiquitin 9606
492 1Q0W 2 B Ubiquitin 4932
493 1OTR 2 B Ubiquitin 4932
494 1G6J 1 A UBIQUITIN 9606
495 1FXT 2 B UBIQUITIN 9606
496 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
497 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
498 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606