6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Sequence Similarity Clusters for the Entities in PDB 6MSB

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2042
95 % 1 31 2215
90 % 1 31 2322
70 % 1 32 2322
50 % 1 32 2345
40 % 7 56 1321
30 % 7 56 1361
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 4252
95 % 1 16 5075
90 % 1 20 4021
70 % 1 20 4026
50 % 1 20 3959
40 % 1 20 3938
30 % 1 20 3849
Entity #11 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 33 1517
95 % 5 33 1982
90 % 5 33 2046
70 % 5 33 2101
50 % 5 35 2011
40 % 5 35 2047
30 % 5 35 2078
Entity #12 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 29 1868
95 % 1 33 2090
90 % 1 33 2168
70 % 1 30 2511
50 % 1 30 2540
40 % 6 53 1428
30 % 6 53 1459
Entity #13 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2845
95 % 1 25 2850
90 % 1 25 2914
70 % 6 49 1445
50 % 6 49 1483
40 % 6 49 1533
30 % 6 49 1561
Entity #14 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2879
95 % 1 21 3520
90 % 1 21 3596
70 % 6 39 1824
50 % 6 39 1845
40 % 6 39 1898
30 % 6 39 1928
Entity #15 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 30 1799
95 % 1 30 2366
90 % 1 30 2342
70 % 6 55 1283
50 % 6 77 625
40 % 11 147 395
30 % 11 147 410
Entity #16 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2078
95 % 1 31 2270
90 % 1 31 2325
70 % 1 31 2387
50 % 6 55 1316
40 % 6 55 1359
30 % 11 101 728
Entity #17 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2053
95 % 1 31 2231
90 % 1 31 2285
70 % 1 31 2345
50 % 6 49 1490
40 % 12 147 395
30 % 12 147 410
Entity #18 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2059
95 % 1 22 3307
90 % 1 22 3574
70 % 1 22 3399
50 % 6 46 1574
40 % 6 46 1637
30 % 12 101 728
Entity #19 | Chains: u,w
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1644
95 % 434 525 4
90 % 277 351 19
70 % 489 586 9
50 % 507 607 10
40 % 507 611 12
30 % 519 630 18
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 2061
95 % 1 31 2261
90 % 1 31 2317
70 % 1 31 2377
50 % 1 31 2412
40 % 1 31 2432
30 % 1 31 2447
Entity #20 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 51 503
95 % 25 55 579
90 % 25 55 612
70 % 25 55 632
50 % 312 364 53
40 % 317 370 59
30 % 1947 2291 2
Entity #21 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 45 543
95 % 25 54 586
90 % 25 54 613
70 % 25 54 639
50 % 28 58 599
40 % 317 369 58
30 % 1948 2291 2
Entity #22 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 45 542
95 % 25 54 587
90 % 25 54 614
70 % 25 54 641
50 % 315 367 46
40 % 317 369 60
30 % 1949 2291 2
Entity #23 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 44 560
95 % 25 55 583
90 % 25 55 608
70 % 25 55 640
50 % 314 366 47
40 % 328 396 21
30 % 1950 2291 2
Entity #24 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 48 479
95 % 25 54 585
90 % 25 54 611
70 % 25 54 638
50 % 316 368 45
40 % 316 368 61
30 % 1951 2291 2
Entity #25 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 44 562
95 % 25 55 582
90 % 25 55 607
70 % 25 55 636
50 % 25 55 674
40 % 25 55 707
30 % 25 55 738
Entity #26 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 46 465
95 % 26 55 479
90 % 26 55 507
70 % 26 55 540
50 % 62 100 336
40 % 64 102 339
30 % 1952 2291 2
Entity #27 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1867
95 % 2 18 2417
90 % 3 23 1994
70 % 3 23 2049
50 % 3 23 2077
40 % 3 23 2111
30 % 3 23 2143
Entity #28 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1871
95 % 2 18 2430
90 % 3 23 2005
70 % 3 23 2060
50 % 6 26 1775
40 % 6 26 1825
30 % 6 26 1855
Entity #29 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 561
95 % 25 54 584
90 % 25 54 609
70 % 25 54 637
50 % 312 360 55
40 % 317 366 62
30 % 317 366 66
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1931
95 % 1 32 2170
90 % 1 32 2226
70 % 1 32 2296
50 % 1 32 2332
40 % 6 56 1328
30 % 6 56 1371
Entity #30 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 44 566
95 % 25 54 581
90 % 25 54 606
70 % 25 54 635
50 % 25 54 668
40 % 314 363 66
30 % 316 365 68
Entity #31 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 17 2068
95 % 2 17 2623
90 % 3 22 2135
70 % 3 22 2224
50 % 4 23 2068
40 % 4 23 2123
30 % 4 23 2155
Entity #32 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1754
95 % 3 19 2241
90 % 4 24 1875
70 % 4 24 1932
50 % 4 24 1976
40 % 291 330 83
30 % 291 330 89
Entity #33 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 19 1722
95 % 3 19 2250
90 % 4 24 1895
70 % 4 24 1938
50 % 4 24 1982
40 % 4 24 2018
30 % 4 24 2042
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1650
95 % 1 32 2122
90 % 1 32 2184
70 % 3 34 2082
50 % 3 34 2128
40 % 3 34 2165
30 % 3 34 2198
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1917
95 % 1 32 2145
90 % 1 32 2206
70 % 1 32 2274
50 % 1 32 2315
40 % 1 32 2341
30 % 6 56 1375
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3703
95 % 1 21 3620
90 % 1 21 3687
70 % 1 21 3687
50 % 1 21 3626
40 % 7 40 1882
30 % 7 40 1910
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 2110
95 % 1 32 2144
90 % 1 32 2205
70 % 1 32 2273
50 % 1 32 2314
40 % 1 32 2340
30 % 6 57 1351
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3659
95 % 1 21 3559
90 % 1 21 3628
70 % 1 21 3624
50 % 1 21 3558
40 % 1 21 3537
30 % 1 21 3472
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1692
95 % 1 32 2128
90 % 1 32 2189
70 % 1 32 2257
50 % 6 57 1273
40 % 6 57 1316
30 % 6 57 1353

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6Q00 1 A Ubiquitin 9606
2 6Q01 1 A, B Ubiquitin 9913
3 5NVG 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 5GOB 1 A Ubiquitin 9606
7 5GOB 2 B D-ubiquitin 9606
8 5W46 1 A, B Polyubiquitin-B 9606
9 5GOD 1 A, B Ubiquitin 9606
10 5GOD 2 C, D D-ubiquitin 9606
11 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
12 3NHE 2 B Ubiquitin 9606
13 5V1Y 2 C, D Ubiquitin 9606
14 4M0W 2 B Ubiquitin 9913
15 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
16 2GBJ 1 A, B Ubiquitin 9606
17 1YIW 1 A, B, C Ubiquitin 9031
18 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
19 2WWZ 1 A, B UBIQUITIN 9913
20 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
21 4IUM 2 B Ubiquitin UNP residues 1-75 9606
22 3A9K 1 A Ubiquitin 10090
23 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
24 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
25 4UN2 1 A UBIQUITIN 9606
26 4PIH 1 A, B Ubiquitin 9606
27 2ZCC 1 A, B, C Ubiquitin 9913
28 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
29 6FDK 2 B Polyubiquitin-B 9606
30 5K9P 1 A Polyubiquitin-B 9606
31 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
32 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
33 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
34 2ZNV 2 B, E Ubiquitin 10090
35 2GBM 1 A, B, C, D Ubiquitin 9606
36 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
37 5EMZ 1 A, C, E Polyubiquitin-B 9606
38 6B7M 2 B, C Polyubiquitin-C 9606
39 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
40 2GBN 1 A Ubiquitin 9606
41 2ZCB 1 A, B, C Ubiquitin 9606
42 5OXI 1 A, B Ubiquitin L67S mutant 9606
43 5J8P 1 A ubiquitin 9606
44 5J8P 2 B D-ubiquitin 9606
45 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
46 6FGE 2 C Polyubiquitin-B 9606
47 3NS8 1 A, B Ubiquitin 9606
48 5GOJ 1 A Ubiquitin 9606
49 5GOJ 2 B D-ubiquitin 9606
50 6OI4 2 C, D ubiquitin 9606
51 1UBI 1 A UBIQUITIN 9606
52 2D3G 1 A, B ubiquitin 9913
53 5GOC 1 A Ubiquitin 9606
54 5GOC 2 D D-ubiquitin 9606
55 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
56 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
57 5TXK 2 B Polyubiquitin-B 9606
58 5WFI 2 C, D Ubiquitin 9606
59 1UBQ 1 A UBIQUITIN 9606
60 6B7O 2 B, C Polyubiquitin-C 9606
61 4HJK 1 A Ubiquitin UNP residues 87-162 9606
62 6GLC 2 B Polyubiquitin-B 9606
63 3N32 1 A Ubiquitin 9606
64 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
65 3ONS 1 A Ubiquitin 9606
66 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
67 3MHS 4 D Ubiquitin 9606
68 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
69 2HD5 2 B Polyubiquitin residues 1-76 9913
70 5NMC 1 A, B, C Polyubiquitin-C 9606
71 5GOI 1 A, B Ubiquitin 9606
72 5GOI 2 C, D D-ubiquitin 9606
73 1WRD 2 B Ubiquitin 9913
74 5GVI 2 B ubiquitin 10090
75 5GVI 3 C ubiquitin 10090
76 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
77 5V1Z 2 C, D Ubiquitin 9606
78 3ALB 1 A, B, C, D ubiquitin 9606
79 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
80 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
81 5X3M 1 A Polyubiquitin-B 9606
82 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
83 4LDT 2 B Ubiquitin aldehyde 9606
84 4LDT 4 D Ubiquitin 9606
85 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
86 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
87 2QHO 1 A, C, E, G Ubiquitin 9913
88 3H7P 1 A Ubiquitin 9606
89 3H7P 2 B Ubiquitin 9606
90 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
91 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
92 5GO7 1 A Ubiquitin 9606
93 5GO7 2 B D-ubiquitin 9606
94 1P3Q 2 U, V Ubiquitin 9913
95 2OOB 2 B Ubiquitin 9913
96 5ULF 2 B, D Ubiquitin 9606
97 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
98 6ISU 2 B Ubiquitin 9606
99 6ISU 3 C Ubiquitin 9606
100 5ULH 2 B Ubiquitin 9606
101 3HM3 1 A, B, C, D Ubiquitin 9606
102 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
103 5GOK 1 A Ubiquitin 9606
104 5GOK 2 B D-ubiquitin 9606
105 4WLR 3 C Polyubiquitin-B 9606
106 3WWQ 1 A, D, G, J Ubiquitin 10090
107 6K9P 2 G Ubiquitin 9606
108 3EFU 1 A Ubiquitin 9606
109 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
110 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
111 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
112 1UZX 2 B UBIQUITIN 9913
113 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
114 1S1Q 2 B, D ubiquitin 9606
115 6NYA 2 B, E Ubiquitin residues 77-152 4565
116 6SQR 6 I Polyubiquitin-C Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chain I form a covalent bond with K85 sidechain in Chain H. 9606
117 6QML 2 B, E Polyubiquitin-B Met 1 substituted with Norleucine (NLE) 9606
118 6QML 3 C, F Polyubiquitin-C 9606
119 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
120 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
121 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
122 2GBR 1 A, B, C Ubiquitin 9606
123 6P5B 3 E Ubiquitin 9606
124 5DFL 1 B Ubiquitin 9606
125 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
126 5GOH 1 A Ubiquitin 9606
127 5GOH 2 D D-ubiquitin 9606
128 2G45 2 B, E Ubiquitin 9606
129 6AQR 4 D Polyubiquitin-C 9606
130 5JBY 1 A, C, E ubiquitin 9606
131 5JBY 2 B, D, F D-ubiquitin 9606
132 5IFR 2 B Polyubiquitin-B 9606
133 6JB7 1 B Ubiquitin 9606
134 5GOG 1 A Ubiquitin 9606
135 5GOG 2 B D-ubiquitin 9606
136 2GBK 1 A, B, C, D Ubiquitin 9606
137 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
138 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
139 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
140 1AAR 1 A, B DI-UBIQUITIN 9913
141 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
142 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
143 6OQ1 2 C, D Ubiquitin 9606
144 6RYA 2 B, D, F Polyubiquitin-C 9606
145 2WX0 1 A, B, E, F UBIQUITIN 9913
146 3A1Q 2 B, E Ubiquitin 10090
147 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
148 3H7S 1 A, B Ubiquitin 9606
149 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
150 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
151 2C7M 2 B UBIQUITIN 9913
152 1TBE 1 A, B TETRAUBIQUITIN 9606
153 6NXK 1 A, B Polyubiquitin-C 9606
154 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
155 5GO8 1 A ubiquitin 9606
156 5GO8 2 B D-ubiquitin 9606
157 3A33 2 B Ubiquitin 9606
158 3VHT 3 C Ubiquitin 10090
159 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
160 6ASR 1 A, C Ubiquitin residues 1-76 9606
161 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
162 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
163 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
164 4NQL 2 B Ubiquitin 10090
165 1NBF 2 C, D Ubiquitin aldehyde 9606
166 2O6V 1 A, C, E, G Ubiquitin 9606
167 2O6V 2 B, F Ubiquitin 9606
168 2O6V 3 D, H Ubiquitin 9606
169 3OFI 2 C, D Ubiquitin 9606
170 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
171 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
172 5JBV 1 A Ubiquitin 9606
173 5JBV 2 B D-ubiquitin 9606
174 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
175 5X3O 2 D D-ubiquitin 9606
176 5ULK 2 B Ubiquitin 9606
177 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
178 6JWI 1 G, I Ubiqutin 10090
179 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
180 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
181 5OHK 2 B Polyubiquitin-B 9606
182 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
183 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
184 3O65 2 B, D, F, H Ubiquitin 9606
185 6IF1 2 C, D Ubiquitin 9606
186 5XPK 1 A Ubiquitin 9606
187 5XPK 2 B D-ubiquitin 9606
188 5XDP 1 B D-ubiquitin 9606
189 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
190 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
191 5OHV 1 A, C Ubiquitin 9606
192 5TUT 2 B Ubiquitin 9606
193 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
194 4MM3 1 A Ubiquitin UNP residues 1-76 9606
195 2FIF 1 A, C, E Ubiquitin 9913
196 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
197 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
198 2XBB 2 C, D UBIQUITIN 9913
199 2GMI 3 C Ubiquitin 9606
200 5J26 1 B Ubiquitin Variant i53 9606
201 6KL4 3 C Ub 9606
202 1WR6 2 E, F, G, H ubiquitin 9913
203 6XAA 2 B Ubiquitin-propargylamide 9606
204 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
205 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
206 4XOK 1 A, B, C Ubiquitin 9606
207 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
208 6S53 2 D, F, J, L Polyubiquitin-C 9606
209 1F9J 1 A, B TETRAUBIQUITIN 9606
210 2FID 1 A Ubiquitin 9913
211 5OHP 2 B, C Polyubiquitin-B 9606
212 1YD8 1 U, V UBIQUIN 9913
213 4BOZ 2 B, C, E UBIQUITIN-C 9606
214 3WXG 2 B, E Ubiquitin 10090
215 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
216 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
217 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
218 6JB6 1 B Ubiquitin 9606
219 3JSV 1 A Ubiquitin 9606
220 3TBL 2 D, E Ubiquitin 9606
221 2HTH 1 A Ubiquitin 9606
222 6EQI 1 A Ubiquitin 9606
223 5E6J 2 B, E ubiquitin 32630
224 2XK5 1 A UBIQUITIN 9606
225 6OAM 2 C, D Ubiquitin 9606
226 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
227 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
228 3H1U 1 A, B Ubiquitin 9913
229 5JTJ 2 B Polyubiquitin-B 9606
230 2WX1 1 A, B UBIQUITIN 9913
231 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
232 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
233 4XOL 1 A, B Ubiquitin 9606
234 5JP3 2 B, D, F, H Polyubiquitin-B 9606
235 5O44 3 D, F Polyubiquitin-B 9606
236 3PHD 2 E, F, G, H Polyubiquitin 9606
237 5ZBU 3 E Ubiquitin 9606
238 3N30 1 A, B Ubiquitin 9606
239 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
240 6W9D 3 C, F, I Ubiquitin Linked to Ube2d2 via isopeptide bond between G76 of ubiquitin and Lys85 of Ube2d2 9606
241 4DHZ 2 B Ubiquitin aldehyde 9606
242 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
243 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
244 5JTV 2 B, D, F, H Polyubiquitin-B 9606
245 5OHN 2 B, D Polyubiquitin-B 9606
246 5TTE 3 F ubiquitin unp residues 1-76 4565
247 2FCQ 1 A, B Ubiquitin residues 1-76 9031
248 3EEC 1 A, B Ubiquitin 9606
249 5VNZ 3 C, F Ubiquitin 9606
250 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
251 5H7S 1 E, F Ubiquitin-like 1 9606
252 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
253 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
254 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
255 2DX5 2 B Ubiquitin 9913
256 5VO0 3 C, F Ubiquitin 9606
257 2AYO 2 B Ubiquitin 9606
258 5KHY 1 A Polyubiquitin-B 9606
259 6DJX 2 B Ubiquitin 9913
260 6TTU 7 U Polyubiquitin-C 9606
261 6VAE 3 C, D Ubiquitin isopeptide bond between C-terminus of ubiquitin (chain C) and Lys523 Nz of FANCI (chain A); isopeptide bond between C-terminus of ubiquitin (chain D) and Lys561 Nz of FANCD2 (chain B) 9606
262 6VAF 3 D Ubiquitin 9606
263 6TNF 3 C Polyubiquitin-C 9606
264 6V5D 1 A Ubiquitin 9606
265 6UYI 2 D Ubiquitin 9606
266 6UYJ 2 D Ubiquitin 9606
267 6TBM 15 R Polyubiquitin-B 9606
268 6T9L 12 O Polyubiquitin-C 9606
269 6KOW 1 A Polyubiquitin-B 9606
270 6KOX 1 A Polyubiquitin-B 9606
271 6K4I 1 A ubiquitin 9606
272 6OQ2 1 B Ubiquitin 9606
273 6OQ2 2 D Ubiquitin 9606
274 6JMA 7 Y Ubiquitin 9606
275 6N13 2 D ubiquitin 9606
276 6N13 4 A phosphoubiquitin 9606
277 6MSB 19 u, w Ubiquitin 9606
278 6MSD 19 u, w Ubiquitin 9606
279 6MSE 19 u Ubiquitin 9606
280 6MSG 19 u Ubiquitin 9606
281 6FTX 8 N, O Polyubiquitin-B 9606
282 5ZD0 1 A ubiquitin 9606
283 5YMY 1 A Ubiquitin 9606
284 5YMY 2 B Ubiquitin 9606
285 5VZM 1 A Ubiquitin UNP residues 1-76 9606
286 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
287 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
288 5VEY 2 B Polyubiquitin-B 9606
289 5VF0 1 A Polyubiquitin-B 9606
290 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
291 5UJL 1 A, B Ubiquitin residues 1-76 9606
292 5UJN 1 A, B Ubiquitin 9606
293 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
294 5KGF 8 M, O Ubiquitin 9606
295 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
296 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
297 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
298 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
299 2N13 2 B Ubiquitin 9606
300 2MWS 1 A Ubiquitin UNP residues 1-76 9606
301 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
302 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
303 2MOR 1 A Ubiquitin UNP residues 1-76 9606
304 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
305 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
306 2MI8 1 A Ubiquitin 9606
307 2RU6 1 A Ubiquitin 9606
308 2MCN 2 B Ubiquitin UNP residues 1-76 9606
309 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
310 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
311 2MBH 2 A Ubiquitin 9606
312 2M0X 1 A engineered ubiquitin variant 9606
313 2LZ6 1 A Ubiquitin 9606
314 2LVO 1 A Ubiquitin 9606
315 2LVP 1 A, B Ubiquitin 9606
316 2LVQ 1 A, B Ubiquitin 9606
317 2RSU 1 A Ubiquitin 9606
318 2LJ5 1 A Ubiquitin 9606
319 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
320 2L0T 1 A Ubiquitin 9606
321 2L0F 1 A Ubiquitin 9606
322 2RR9 1 A, B ubiquitin 9606
323 2KWV 2 B Ubiquitin 9606
324 2KWU 2 B Ubiquitin 9606
325 2KTF 1 A Ubiquitin 9606
326 2KOX 1 A Ubiquitin 9606
327 2KN5 1 A Ubiquitin 9606
328 2KLG 1 A Ubiquitin 9606
329 2KDE 2 B, C Ubiquitin 8355
330 2KDF 2 B, C Ubiquitin 9606
331 2K8B 1 A Ubiquitin 9606
332 2K8C 1 A Ubiquitin 9606
333 2K39 1 A Ubiquitin 8355
334 2JZZ 1 A Ubiquitin 9606
335 2JY6 1 A Ubiquitin protein 9606
336 2Z59 2 B Ubiquitin 9606
337 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
338 2PE9 1 A, B Ubiquitin 9606
339 2PEA 1 A, B Ubiquitin 9606
340 2NR2 1 A Ubiquitin 9606
341 2DEN 2 B Polyubiquitin-B 9606
342 2FUH 2 B Ubiquitin Ubiquitin 10116
343 1ZGU 2 B Ubiquitin 9606
344 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
345 1XQQ 1 A ubiquitin 9606
346 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
347 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
348 1Q5W 2 B Ubiquitin 9606
349 1G6J 1 A UBIQUITIN 9606
350 1FXT 2 B UBIQUITIN 9606
351 1D3Z 1 A PROTEIN (UBIQUITIN) 9606