6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Sequence Similarity Clusters for the Entities in PDB 6MSB

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1906
95 % 1 31 2127
90 % 1 31 2164
70 % 1 32 2133
50 % 1 32 2184
40 % 7 56 1229
30 % 7 56 1272
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 3985
95 % 1 16 4756
90 % 1 20 3789
70 % 1 20 3788
50 % 1 20 3714
40 % 1 20 3702
30 % 1 20 3617
Entity #11 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 33 1482
95 % 5 33 1922
90 % 5 33 1959
70 % 5 33 2010
50 % 5 35 1917
40 % 5 35 1948
30 % 5 35 1985
Entity #12 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 29 1769
95 % 1 33 1973
90 % 1 33 2023
70 % 1 30 2358
50 % 1 30 2375
40 % 6 53 1329
30 % 6 53 1363
Entity #13 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1902
95 % 1 25 2693
90 % 1 25 2799
70 % 6 49 1374
50 % 6 49 1395
40 % 6 49 1437
30 % 6 49 1473
Entity #14 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2710
95 % 1 21 3322
90 % 1 21 3398
70 % 6 39 1712
50 % 6 39 1739
40 % 6 39 1782
30 % 6 39 1806
Entity #15 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 30 1714
95 % 1 30 2251
90 % 1 30 2264
70 % 6 55 1208
50 % 6 77 576
40 % 11 147 369
30 % 11 147 383
Entity #16 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1926
95 % 1 31 2089
90 % 1 31 2173
70 % 1 31 2191
50 % 6 55 1227
40 % 6 55 1266
30 % 11 101 682
Entity #17 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1890
95 % 1 31 2080
90 % 1 31 2134
70 % 1 31 2181
50 % 6 49 1394
40 % 12 147 369
30 % 12 147 383
Entity #18 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1933
95 % 1 22 3083
90 % 1 22 3093
70 % 1 22 3197
50 % 6 46 1476
40 % 6 46 1504
30 % 12 101 682
Entity #19 | Chains: u,w
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1502
95 % 399 490 6
90 % 408 504 6
70 % 458 555 9
50 % 470 570 10
40 % 470 574 12
30 % 481 591 20
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1896
95 % 1 31 2144
90 % 1 31 2182
70 % 1 31 2249
50 % 1 31 2235
40 % 1 31 2318
30 % 1 31 2328
Entity #20 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 48 487
95 % 22 52 567
90 % 22 52 591
70 % 22 52 620
50 % 309 361 42
40 % 314 367 45
30 % 1929 2273 2
Entity #21 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 513
95 % 22 51 565
90 % 22 51 592
70 % 22 51 623
50 % 25 55 597
40 % 314 366 43
30 % 1930 2273 2
Entity #22 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 514
95 % 22 51 566
90 % 22 51 590
70 % 22 51 619
50 % 312 364 37
40 % 314 366 44
30 % 1931 2273 2
Entity #23 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 537
95 % 22 52 560
90 % 22 52 583
70 % 22 52 616
50 % 311 363 38
40 % 325 393 17
30 % 1932 2273 2
Entity #24 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 46 454
95 % 22 51 563
90 % 22 51 585
70 % 22 51 612
50 % 313 365 36
40 % 313 365 46
30 % 1933 2273 2
Entity #25 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 532
95 % 22 52 556
90 % 22 52 577
70 % 22 52 607
50 % 22 52 654
40 % 22 52 681
30 % 22 52 725
Entity #26 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 440
95 % 23 52 470
90 % 23 52 497
70 % 23 52 530
50 % 59 97 323
40 % 61 99 328
30 % 1934 2273 2
Entity #27 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1924
95 % 1 17 2454
90 % 1 21 2137
70 % 1 21 2233
50 % 1 21 2242
40 % 1 21 2260
30 % 1 21 2266
Entity #28 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1911
95 % 1 17 2481
90 % 1 21 2167
70 % 1 21 2215
50 % 4 24 1866
40 % 4 24 1894
30 % 4 24 1924
Entity #29 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 42 538
95 % 22 51 555
90 % 22 51 587
70 % 22 51 615
50 % 309 357 43
40 % 314 363 47
30 % 314 363 48
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1850
95 % 1 32 2019
90 % 1 32 2068
70 % 1 32 2118
50 % 1 32 2172
40 % 6 56 1242
30 % 6 56 1287
Entity #30 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 534
95 % 22 51 568
90 % 22 51 589
70 % 22 51 617
50 % 22 51 668
40 % 311 360 48
30 % 313 362 49
Entity #31 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 2125
95 % 1 16 2687
90 % 1 20 2320
70 % 1 20 2396
50 % 2 21 2244
40 % 2 21 2262
30 % 2 21 2267
Entity #32 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1770
95 % 2 18 2269
90 % 2 22 1998
70 % 2 22 2042
50 % 2 22 2092
40 % 289 328 80
30 % 289 328 85
Entity #33 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1750
95 % 2 18 2296
90 % 2 22 2022
70 % 2 22 2068
50 % 2 22 2120
40 % 2 22 2147
30 % 2 22 2174
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1578
95 % 1 32 2024
90 % 1 32 2073
70 % 3 34 2011
50 % 3 34 2067
40 % 3 34 2055
30 % 3 34 2094
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1879
95 % 1 32 2065
90 % 1 32 2121
70 % 1 32 2172
50 % 1 32 2228
40 % 1 32 2244
30 % 6 56 1303
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3396
95 % 1 21 3342
90 % 1 21 3414
70 % 1 21 3424
50 % 1 21 3377
40 % 7 40 1743
30 % 7 40 1776
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 1982
95 % 1 32 2036
90 % 1 32 2081
70 % 1 32 2134
50 % 1 32 2185
40 % 1 32 2210
30 % 6 57 1273
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3439
95 % 1 21 3394
90 % 1 21 3468
70 % 1 21 3480
50 % 1 21 3432
40 % 1 21 3413
30 % 1 21 3342
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1557
95 % 1 32 2040
90 % 1 32 2086
70 % 1 32 2137
50 % 6 57 1189
40 % 6 57 1231
30 % 6 57 1274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NVG 1 A Polyubiquitin-B 9606
2 4XOF 1 A Ubiquitin 9606
3 3A9J 1 A Ubiquitin 10090
4 3A9J 2 B Ubiquitin 10090
5 5GOB 1 A Ubiquitin 9606
6 5GOB 2 B D-ubiquitin 9606
7 5W46 1 A, B Polyubiquitin-B 9606
8 5GOD 1 A, B Ubiquitin 9606
9 5GOD 2 C, D D-ubiquitin 9606
10 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
11 3NHE 2 B Ubiquitin 9606
12 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
13 1YJ1 1 A, B, C Ubiquitin residues 1-76
14 5NL4 1 A, B, C Polyubiquitin-C 9606
15 5V1Y 2 C, D Ubiquitin 9606
16 4M0W 2 B Ubiquitin 9913
17 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
18 1YIW 1 A, B, C Ubiquitin 9031
19 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
20 2WWZ 1 A, B UBIQUITIN 9913
21 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
22 4IUM 2 B Ubiquitin UNP residues 1-75 9606
23 3A9K 1 A Ubiquitin 10090
24 3A9K 2 B Ubiquitin 10090
25 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
26 1XD3 2 B, D UBC protein 9606
27 5NLF 1 A, B, C Polyubiquitin-C 9606
28 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
29 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
30 4UN2 1 A UBIQUITIN 9606
31 4PIH 1 A, B Ubiquitin 9606
32 2ZCC 1 A, B, C Ubiquitin 9913
33 4PIJ 1 A, B Ubiquitin 9606
34 5NLI 1 A, B, C Polyubiquitin-C 9606
35 5YT6 1 A, C, E, G Ubiquitin 9606
36 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
37 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
38 3BY4 2 B Ubiquitin 9606
39 6FDK 2 B Polyubiquitin-B 9606
40 5K9P 1 A Polyubiquitin-B 9606
41 5NLJ 1 A, B, C Polyubiquitin-B 9606
42 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
43 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
44 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
45 2ZNV 2 B, E Ubiquitin 10090
46 2ZNV 3 C, F Ubiquitin 10090
47 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
48 5EMZ 1 A, C, E Polyubiquitin-B 9606
49 5EMZ 2 B, D, F Polyubiquitin-B 9606
50 6B7M 2 B, C Polyubiquitin-C 9606
51 6HEI 2 B Polyubiquitin-B 9606
52 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
53 2ZCB 1 A, B, C Ubiquitin 9606
54 5OXI 1 A, B Ubiquitin L67S mutant 9606
55 4K1R 2 B, D Polyubiquitin-C 9606
56 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
57 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
58 4I6N 2 B, D Ubiquitin 9606
59 5AF5 1 A POLYUBIQUITIN-C 9606
60 5J8P 1 A ubiquitin 9606
61 5J8P 2 B D-ubiquitin 9606
62 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
63 6EI1 2 B Polyubiquitin-B 9606
64 6FGE 2 C Polyubiquitin-B 9606
65 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
66 3NS8 1 A, B Ubiquitin 9606
67 5GOJ 1 A Ubiquitin 9606
68 5GOJ 2 B D-ubiquitin 9606
69 6OI4 2 C, D ubiquitin 9606
70 1UBI 1 A UBIQUITIN 9606
71 2D3G 1 A, B ubiquitin 9913
72 5GOC 1 A Ubiquitin 9606
73 5GOC 2 D D-ubiquitin 9606
74 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
75 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
76 5TXK 2 B Polyubiquitin-B 9606
77 5WFI 2 C, D Ubiquitin 9606
78 1UBQ 1 A UBIQUITIN 9606
79 6B7O 2 B, C Polyubiquitin-C 9606
80 4ZFR 2 B ubiquitin unp residues 77-152 9606
81 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
82 6GLC 2 B Polyubiquitin-B 9606
83 3N32 1 A Ubiquitin 9606
84 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
85 3ONS 1 A Ubiquitin 9606
86 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
87 3MHS 4 D Ubiquitin 9606
88 5M93 1 A, B, C Polyubiquitin-B 9606
89 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
90 2HD5 2 B Polyubiquitin residues 1-76 9913
91 5NMC 1 A, B, C Polyubiquitin-C 9606
92 5GOI 1 A, B Ubiquitin 9606
93 5GOI 2 C, D D-ubiquitin 9606
94 1WRD 2 B Ubiquitin 9913
95 5GVI 2 B ubiquitin 10090
96 5GVI 3 C ubiquitin 10090
97 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
98 2FCS 1 A, B Ubiquitin residues 1-76
99 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
100 5V1Z 2 C, D Ubiquitin 9606
101 3ALB 1 A, B, C, D ubiquitin 9606
102 6GZS 2 B Polyubiquitin-B 9606
103 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
104 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
105 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
106 4PIG 1 A, B, C, D Ubiquitin 9606
107 5X3M 1 A Polyubiquitin-B 9606
108 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
109 5NL5 1 A, B, C Polyubiquitin-B 9606
110 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
111 4LDT 2 B Ubiquitin aldehyde 9606
112 4LDT 4 D Ubiquitin 9606
113 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
114 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
115 2QHO 1 A, C, E, G Ubiquitin 9913
116 3H7P 1 A Ubiquitin 9606
117 3H7P 2 B Ubiquitin 9606
118 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
119 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
120 5GO7 1 A Ubiquitin 9606
121 5GO7 2 B D-ubiquitin 9606
122 1P3Q 2 U, V Ubiquitin 9913
123 2OOB 2 B Ubiquitin 9913
124 5ULF 2 B, D Ubiquitin 9606
125 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
126 6ISU 2 B Ubiquitin 9606
127 6ISU 3 C Ubiquitin 9606
128 5ULH 2 B Ubiquitin 9606
129 3HM3 1 A, B, C, D Ubiquitin 9606
130 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
131 5GOK 1 A Ubiquitin 9606
132 5GOK 2 B D-ubiquitin 9606
133 4WLR 3 C Polyubiquitin-B 9606
134 3WWQ 1 A, D, G, J Ubiquitin 10090
135 3WWQ 2 B, E, H, K Ubiquitin 10090
136 3EFU 1 A Ubiquitin 9606
137 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
138 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
139 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
140 4IG7 2 B Ubiquitin 9606
141 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
142 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
143 5WVO 1 A, B Ubiquitin 9606
144 1UZX 2 B UBIQUITIN 9913
145 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
146 1S1Q 2 B, D ubiquitin 9606
147 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
148 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
149 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
150 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
151 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
152 4XKL 1 A, C Ubiquitin 9606
153 4FJV 2 B, D Polyubiquitin-C 9606
154 5DFL 1 B Ubiquitin 9606
155 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
156 5GOH 1 A Ubiquitin 9606
157 5GOH 2 D D-ubiquitin 9606
158 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
159 2G45 2 B, E Ubiquitin 9606
160 6AQR 4 D Polyubiquitin-C 9606
161 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
162 5ZQ3 2 C, D Ubiquitin 9606
163 5ZQ4 2 C, D ubiquitin 9606
164 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
165 5JBY 1 A, C, E ubiquitin 9606
166 5JBY 2 B, D, F D-ubiquitin 9606
167 5IFR 2 B Polyubiquitin-B 9606
168 2IBI 2 B Ubiquitin 9606
169 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
170 6JB7 1 B Ubiquitin 9606
171 5GOG 1 A Ubiquitin 9606
172 5GOG 2 B D-ubiquitin 9606
173 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
174 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
175 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
176 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
177 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
178 1AAR 1 A, B DI-UBIQUITIN 9913
179 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
180 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
181 6OQ1 1 A, B Ubiquitin 9606
182 6OQ1 2 C, D Ubiquitin 9606
183 6OQ1 3 E, F Ubiquitin 9606
184 6RYA 2 B, D, F Polyubiquitin-C 9606
185 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
186 2WX0 1 A, B, E, F UBIQUITIN 9913
187 3A1Q 1 A, D Ubiquitin 10090
188 3A1Q 2 B, E Ubiquitin 10090
189 5TR4 2 B, D Ubiquitin 9913
190 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
191 3H7S 1 A, B Ubiquitin 9606
192 3C0R 2 B, D Ubiquitin 9606
193 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
194 6PGV 2 B Polyubiquitin-B 9606
195 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
196 2C7M 2 B UBIQUITIN 9913
197 1TBE 1 A, B TETRAUBIQUITIN 9606
198 6NXK 1 A, B Polyubiquitin-C 9606
199 3PT2 2 B Ubiquitin B 9606
200 5VZW 2 C, D Ubiquitin 9606
201 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
202 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
203 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
204 5GO8 1 A ubiquitin 9606
205 5GO8 2 B D-ubiquitin 9606
206 3A33 2 B Ubiquitin 9606
207 3VHT 3 C Ubiquitin 10090
208 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
209 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
210 6ASR 1 A, C Ubiquitin residues 1-76 9606
211 2FCN 1 A, B Ubiquitin residues 1-76
212 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
213 4DHJ 3 D, H Ubiquitin 9606
214 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
215 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
216 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
217 4NQL 2 B Ubiquitin 10090
218 4NQL 3 C Ubiquitin 10090
219 1NBF 2 C, D Ubiquitin aldehyde 9606
220 2O6V 1 A, C, E, G Ubiquitin 9606
221 2O6V 2 B, F Ubiquitin 9606
222 2O6V 3 D, H Ubiquitin 9606
223 3OFI 2 C, D Ubiquitin 9606
224 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
225 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
226 5JBV 1 A Ubiquitin 9606
227 5JBV 2 B D-ubiquitin 9606
228 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
229 5X3O 2 D D-ubiquitin 9606
230 5ULK 2 B Ubiquitin 9606
231 5ZQ5 2 B, D Ubiquitin 9606
232 6FX4 2 B, D Polyubiquitin-B 9606
233 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
234 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
235 3IFW 2 B Ubiquitin 9606
236 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
237 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
238 2FCM 1 A, B Ubiquitin residues 1-76
239 6JWI 1 G, I Ubiqutin 10090
240 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
241 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
242 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
243 3I3T 2 B, D, F, H Ubiquitin 9606
244 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
245 5OHK 2 B Polyubiquitin-B 9606
246 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
247 6JKY 3 C, F Ub 48269
248 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
249 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
250 3O65 2 B, D, F, H Ubiquitin 9606
251 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
252 6IF1 2 C, D Ubiquitin 9606
253 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
254 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
255 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
256 5XPK 1 A Ubiquitin 9606
257 5XPK 2 B D-ubiquitin 9606
258 5XDP 1 B D-ubiquitin 9606
259 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
260 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
261 5OHV 1 A, C Ubiquitin 9606
262 5TUT 2 B Ubiquitin 9606
263 3OLM 2 D Ubiquitin 4932
264 3CMM 2 B, D Ubiquitin 559292
265 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
266 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
267 4MM3 1 A Ubiquitin UNP residues 1-76 9606
268 2FIF 1 A, C, E Ubiquitin 9913
269 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
270 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
271 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
272 2XBB 2 C, D UBIQUITIN 9913
273 2GMI 3 C Ubiquitin 9606
274 3DVG 3 X Ubiquitin D77 9606
275 3DVG 4 Y Ubiquitin 9606
276 1WR6 2 E, F, G, H ubiquitin 9913
277 3LDZ 1 E, F, G Ubiquitin 9913
278 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
279 5ZQ7 2 B, D Ubiquitin 9606
280 3RUL 1 A, B, C, D Ubiquitin 9606
281 5BNB 2 E, F, G, I Polyubiquitin-B 9606
282 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
283 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
284 4XOK 1 A, B, C Ubiquitin 9606
285 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
286 5ZQ6 2 B, D Ubiquitin 9606
287 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
288 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
289 6S53 2 D, F, J, L Polyubiquitin-C 9606
290 3DVN 3 U, X Ubiquitin D77 9606
291 3DVN 4 V, Y Ubiquitin 9606
292 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
293 1F9J 1 A, B TETRAUBIQUITIN 9606
294 2FID 1 A Ubiquitin 9913
295 5OHP 2 B, C Polyubiquitin-B 9606
296 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
297 1YD8 1 U, V UBIQUIN 9913
298 4BOZ 2 B, C, E UBIQUITIN-C 9606
299 3WXG 2 B, E Ubiquitin 10090
300 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
301 6CP2 3 C Polyubiquitin-B 9606
302 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
303 3IHP 2 C, D Ubiquitin 9606
304 5LN1 2 U Polyubiquitin-B 9606
305 3K9P 2 B Ubiquitin 9606
306 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
307 6JB6 1 B Ubiquitin 9606
308 3JSV 1 A Ubiquitin 9606
309 3JSV 2 B Ubiquitin 9606
310 3TBL 2 D, E Ubiquitin 9606
311 2HTH 1 A Ubiquitin 9606
312 3KW5 2 B Ubiquitin 9606
313 6EQI 1 A Ubiquitin 9606
314 5E6J 2 B, E ubiquitin 32630
315 5E6J 3 C, F Polyubiquitin-B 32630
316 2XK5 1 A UBIQUITIN 9606
317 2XK5 2 B UBIQUITIN 9606
318 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
319 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
320 3KVF 2 B Ubiquitin 9606
321 6FYH 2 B Polyubiquitin-B 9606
322 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
323 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
324 3H1U 1 A, B Ubiquitin 9913
325 6HEK 2 B, D Polyubiquitin-B 9606
326 5JTJ 2 B Polyubiquitin-B 9606
327 2WX1 1 A, B UBIQUITIN 9913
328 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
329 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
330 6DC6 2 B, D Ubiquitin 9606
331 4XOL 1 A, B Ubiquitin 9606
332 5JP3 2 B, D, F, H Polyubiquitin-B 9606
333 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
334 5O44 1 A, E Ubiquitin 7370
335 5O44 2 B, C Polyubiquitin-B 9606
336 5O44 3 D, F Polyubiquitin-B 9606
337 3PHD 2 E, F, G, H Polyubiquitin 9606
338 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
339 5ZBU 3 E Ubiquitin 9606
340 3N30 1 A, B Ubiquitin 9606
341 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
342 3JVZ 3 X, Y Ubiquitin 9606
343 4DHZ 2 B Ubiquitin aldehyde 9606
344 4DHZ 3 E Ubiquitin 9606
345 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
346 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
347 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
348 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
349 3JW0 3 X, Y Ubiquitin 9606
350 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
351 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
352 5JTV 2 B, D, F, H Polyubiquitin-B 9606
353 5OHN 2 B, D Polyubiquitin-B 9606
354 2FCQ 1 A, B Ubiquitin residues 1-76 9031
355 3EEC 1 A, B Ubiquitin 9606
356 5VNZ 3 C, F Ubiquitin 9606
357 6H4H 2 C, D Polyubiquitin-B 9606
358 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
359 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
360 5H7S 1 E, F Ubiquitin-like 1 9606
361 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
362 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
363 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
364 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
365 2DX5 2 B Ubiquitin 9913
366 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
367 5VO0 3 C, F Ubiquitin 9606
368 6DJW 2 B Ubiquitin 9913
369 2AYO 2 B Ubiquitin 9606
370 5KHY 1 A Polyubiquitin-B 9606
371 5KHY 2 B Polyubiquitin-B 9606
372 6DJX 2 B Ubiquitin 9913
373 4JIO 2 U Ubiquitin 9606
374 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
375 6VEN 7 K Ubiquitin 9606
376 6V5D 1 A Ubiquitin 9606
377 6UH5 11 Q Ubiquitin 9606
378 6KOW 1 A Polyubiquitin-B 9606
379 6KOX 1 A Polyubiquitin-B 9606
380 6KIU 11 O Ubiquitin 9606
381 6KIV 9 O Ubiquitin 9606
382 6KIW 9 O Ubiquitin 9606
383 6K4I 1 A ubiquitin 9606
384 6OQ2 1 B Ubiquitin 9606
385 6OQ2 2 D Ubiquitin 9606
386 6OQ2 3 E Ubiquitin 9606
387 6OA9 2 H, J, K Ubiquitin 4932
388 6OAA 3 H Ubiquitin 4932
389 6O96 8 L Polyubiquitin-B 9606
390 6JMA 7 Y Ubiquitin 9606
391 6J99 7 L Ubiquitin 9606
392 6NQA 7 L Ubiquitin 9606
393 6NOG 5 L Ubiquitin 9606
394 6NN6 8 L Ubiquitin 9606
395 6QF8 1 A Polyubiquitin-B 9606
396 6NJ9 5 L Ubiquitin 9606
397 6N13 2 D ubiquitin 9606
398 6N13 4 A phosphoubiquitin 9606
399 6MSB 19 u, w Ubiquitin 9606
400 6MSD 19 u, w Ubiquitin 9606
401 6MSE 19 u Ubiquitin 9606
402 6MSG 19 u Ubiquitin 9606
403 6FTX 8 N, O Polyubiquitin-B 9606
404 5ZD0 1 A ubiquitin 9606
405 5YMY 1 A Ubiquitin 9606
406 5YMY 2 B Ubiquitin 9606
407 5VZM 1 A Ubiquitin UNP residues 1-76 9606
408 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
409 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
410 5VEY 2 B Polyubiquitin-B 9606
411 5VF0 1 A Polyubiquitin-B 9606
412 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
413 5UJL 1 A, B Ubiquitin residues 1-76 9606
414 5UJN 1 A, B Ubiquitin 9606
415 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
416 5KGF 8 M, O Ubiquitin 9606
417 2NBD 1 A entity 9606
418 2NBE 1 A entity 9606
419 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
420 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
421 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
422 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
423 2N2K 1 A ubiquitin 9606
424 2N2K 2 B ubiquitin 9606
425 2N13 2 B Ubiquitin 9606
426 2N13 3 C Ubiquitin 9606
427 2MWS 1 A Ubiquitin UNP residues 1-76 9606
428 2MUR 2 B Ubiquitin 9606
429 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
430 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
431 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
432 2MOR 1 A Ubiquitin UNP residues 1-76 9606
433 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
434 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
435 2RU6 1 A Ubiquitin 9606
436 2MCN 2 B Ubiquitin UNP residues 1-76 9606
437 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
438 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
439 2MBH 2 A Ubiquitin 9606
440 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
441 2LZ6 1 A Ubiquitin 9606
442 2LVO 1 A Ubiquitin 9606
443 2LVP 1 A, B Ubiquitin 9606
444 2LVQ 1 A, B Ubiquitin 9606
445 2RSU 1 A Ubiquitin 9606
446 2LJ5 1 A Ubiquitin 9606
447 2LD9 1 A Ubiquitin 9606
448 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
449 2L0T 1 A Ubiquitin 9606
450 2L0F 1 A Ubiquitin 9606
451 2L00 2 B Ubiquitin ubiquitin core domain 4932
452 2RR9 1 A, B ubiquitin 9606
453 2KWV 2 B Ubiquitin 9606
454 2KWU 2 B Ubiquitin 9606
455 2KTF 1 A Ubiquitin 9606
456 2KOX 1 A Ubiquitin 9606
457 2KN5 1 A Ubiquitin 9606
458 2KLG 1 A Ubiquitin 9606
459 2KJH 2 B Ubiquitin 9606
460 2KHW 2 B Ubiquitin 9606
461 2KDE 2 B, C Ubiquitin 8355
462 2KDF 2 B, C Ubiquitin 9606
463 2K8B 1 A Ubiquitin 9606
464 2K8C 1 A Ubiquitin 9606
465 2K6D 2 B Ubiquitin ubiquitin 9606
466 2K39 1 A Ubiquitin 8355
467 2JZZ 1 A Ubiquitin 9606
468 2JY6 1 A Ubiquitin protein 9606
469 2JWZ 1 A Ubiquitin 4932
470 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
471 2Z59 2 B Ubiquitin 9606
472 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
473 2PE9 1 A, B Ubiquitin 9606
474 2PEA 1 A, B Ubiquitin 9606
475 2NR2 1 A Ubiquitin 9606
476 2G3Q 2 B Ubiquitin 4932
477 2DEN 2 B Polyubiquitin-B 9606
478 2FUH 2 B Ubiquitin Ubiquitin 10116
479 1ZGU 2 B Ubiquitin 9606
480 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
481 1XQQ 1 A ubiquitin 9606
482 1WR1 1 A Ubiquitin 4932
483 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
484 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
485 1Q5W 2 B Ubiquitin 9606
486 1Q0W 2 B Ubiquitin 4932
487 1OTR 2 B Ubiquitin 4932
488 1G6J 1 A UBIQUITIN 9606
489 1FXT 2 B UBIQUITIN 9606
490 1D3Z 1 A PROTEIN (UBIQUITIN) 9606