6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Sequence Similarity Clusters for the Entities in PDB 6MSB

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 953 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1898
95 % 1 31 2145
90 % 1 31 2195
70 % 1 32 2173
50 % 1 32 2223
40 % 7 56 1246
30 % 7 56 1287
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 3986
95 % 1 16 4761
90 % 1 20 3797
70 % 1 20 3827
50 % 1 20 3682
40 % 1 20 3746
30 % 1 20 3585
Entity #11 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 33 1424
95 % 5 33 1907
90 % 5 33 1974
70 % 5 33 1987
50 % 5 35 1906
40 % 5 35 1945
30 % 5 35 1978
Entity #12 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 29 1743
95 % 1 33 1963
90 % 1 33 2012
70 % 1 30 2315
50 % 1 30 2359
40 % 6 53 1342
30 % 6 53 1370
Entity #13 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 433 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2693
95 % 1 25 2724
90 % 1 25 2796
70 % 6 49 1369
50 % 6 49 1384
40 % 6 49 1442
30 % 6 49 1470
Entity #14 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2680
95 % 1 21 3345
90 % 1 21 3413
70 % 6 39 1710
50 % 6 39 1741
40 % 6 39 1791
30 % 6 39 1816
Entity #15 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 30 1708
95 % 1 30 2249
90 % 1 30 2254
70 % 6 55 1203
50 % 6 77 575
40 % 11 147 371
30 % 11 147 384
Entity #16 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1922
95 % 1 31 2089
90 % 1 31 2147
70 % 1 31 2195
50 % 6 55 1236
40 % 6 55 1289
30 % 11 101 681
Entity #17 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 6648
95 % 1 31 2096
90 % 1 31 2133
70 % 1 31 2247
50 % 6 49 1396
40 % 12 147 371
30 % 12 147 384
Entity #18 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1931
95 % 1 22 3084
90 % 1 22 3160
70 % 1 22 3183
50 % 6 46 1497
40 % 6 46 1545
30 % 12 101 681
Entity #19 | Chains: u,w
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 1530
95 % 400 491 6
90 % 408 504 6
70 % 458 555 9
50 % 470 570 10
40 % 470 574 12
30 % 482 595 19
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 27 1891
95 % 1 31 2080
90 % 1 31 2137
70 % 1 31 2185
50 % 1 31 2235
40 % 1 31 2264
30 % 1 31 2269
Entity #20 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 48 483
95 % 22 52 561
90 % 22 52 581
70 % 22 52 611
50 % 309 361 41
40 % 314 367 44
30 % 1929 2273 2
Entity #21 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 514
95 % 22 51 560
90 % 22 51 580
70 % 22 51 610
50 % 25 55 597
40 % 314 366 43
30 % 1930 2273 2
Entity #22 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 43 509
95 % 22 51 567
90 % 22 51 587
70 % 22 51 619
50 % 312 364 37
40 % 314 366 45
30 % 1931 2273 2
Entity #23 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 533
95 % 22 52 568
90 % 22 52 589
70 % 22 52 613
50 % 311 363 38
40 % 325 393 17
30 % 1932 2273 2
Entity #24 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 46 453
95 % 22 51 563
90 % 22 51 582
70 % 22 51 612
50 % 313 365 36
40 % 313 365 46
30 % 1933 2273 2
Entity #25 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 532
95 % 22 52 559
90 % 22 52 579
70 % 22 52 626
50 % 22 52 656
40 % 22 52 694
30 % 22 52 731
Entity #26 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 437
95 % 23 52 470
90 % 23 52 496
70 % 23 52 529
50 % 59 97 322
40 % 61 99 327
30 % 1934 2273 2
Entity #27 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1938
95 % 1 17 2482
90 % 1 21 2153
70 % 1 21 2228
50 % 1 21 2253
40 % 1 21 2304
30 % 1 21 2314
Entity #28 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 1902
95 % 1 17 2476
90 % 1 21 2160
70 % 1 21 2212
50 % 4 24 1858
40 % 4 24 1903
30 % 4 24 1935
Entity #29 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 42 529
95 % 22 51 566
90 % 22 51 585
70 % 22 51 617
50 % 309 357 43
40 % 314 363 47
30 % 314 363 48
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1823
95 % 1 32 2066
90 % 1 32 2092
70 % 1 32 2146
50 % 1 32 2194
40 % 6 56 1256
30 % 6 56 1299
Entity #30 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 42 531
95 % 22 51 565
90 % 22 51 584
70 % 22 51 616
50 % 22 51 659
40 % 311 360 48
30 % 313 362 49
Entity #31 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 2121
95 % 1 16 2691
90 % 1 20 2345
70 % 1 20 2411
50 % 2 21 2271
40 % 2 21 2293
30 % 2 21 2299
Entity #32 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1769
95 % 2 18 2310
90 % 2 22 2032
70 % 2 22 2087
50 % 2 22 2131
40 % 289 328 79
30 % 292 332 79
Entity #33 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 1755
95 % 2 18 2261
90 % 2 22 2016
70 % 2 22 2040
50 % 2 22 2087
40 % 2 22 2137
30 % 2 22 2161
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1548
95 % 1 32 1993
90 % 1 32 2055
70 % 3 34 2010
50 % 3 34 1980
40 % 3 34 2041
30 % 3 34 2060
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 28 1864
95 % 1 32 2037
90 % 1 32 2086
70 % 1 32 2138
50 % 1 32 2187
40 % 1 32 2227
30 % 6 56 1301
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3404
95 % 1 21 3341
90 % 1 21 3410
70 % 1 21 3414
50 % 1 21 3372
40 % 7 40 1750
30 % 7 40 1775
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 26 2017
95 % 1 32 2056
90 % 1 32 2117
70 % 1 32 2163
50 % 1 32 2212
40 % 1 32 2248
30 % 6 57 1285
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3398
95 % 1 21 3325
90 % 1 21 3400
70 % 1 21 3405
50 % 1 21 3360
40 % 1 21 3344
30 % 1 21 3300
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 309 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 32 1562
95 % 1 32 2058
90 % 1 32 2120
70 % 1 32 2165
50 % 6 57 1196
40 % 6 57 1245
30 % 6 57 1286

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6J2X 23 P 26S PROTEASOME REGULATORY SUBUNIT RPN5 4932
2 6J30 23 P 26S proteasome regulatory subunit RPN5 4932
3 6J2N 23 P 26S proteasome regulatory subunit RPN5 4932
4 6J2Q 23 P 26S proteasome regulatory subunit RPN5 4932
5 6J2C 23 P 26S proteasome regulatory subunit RPN5 4932
6 6MSB 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
7 6MSD 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
8 6MSE 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
9 6MSG 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
10 6MSH 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
11 6MSJ 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
12 6MSK 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
13 6FVT 23 P 26S proteasome regulatory subunit RPN5 4932
14 6FVU 23 P 26S proteasome regulatory subunit RPN5 4932
15 6FVV 23 P 26S proteasome regulatory subunit RPN5 4932
16 6FVW 23 P 26S proteasome regulatory subunit RPN5 4932
17 6FVX 23 P 26S proteasome regulatory subunit RPN5 4932
18 6FVY 23 P 26S proteasome regulatory subunit RPN5 4932
19 6EPC 22 P Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 10116
20 6EPD 22 P Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 10116
21 6EPE 22 P Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 10116
22 6EPF 22 P Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 10116
23 5VHF 10 W 26S proteasome non-ATPase regulatory subunit 12 9606
24 5VHH 9 W 26S proteasome non-ATPase regulatory subunit 12 9606
25 5VHI 9 W 26S proteasome non-ATPase regulatory subunit 12 9606
26 5VHS 9 W 26S proteasome non-ATPase regulatory subunit 12 9606
27 5VGZ 9 W 26S proteasome non-ATPase regulatory subunit 12 9606
28 5VFP 17 W 26S proteasome non-ATPase regulatory subunit 12 9606
29 5VFQ 17 W 26S proteasome non-ATPase regulatory subunit 12 9606
30 5VFR 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
31 5VFS 17 W 26S proteasome non-ATPase regulatory subunit 12 9606
32 5VFT 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
33 5VFU 3 W 26S proteasome non-ATPase regulatory subunit 12 9606
34 5WVI 22 P 26S proteasome regulatory subunit RPN5 4932
35 5WVK 23 P 26S proteasome regulatory subunit RPN5 4932
36 5MPB 29 P 26S proteasome regulatory subunit RPN5 4932
37 5MPC 29 P 26S proteasome regulatory subunit RPN5 4932
38 5MPD 9 P 26S proteasome regulatory subunit RPN5 4932
39 5MPE 9 P 26S proteasome regulatory subunit RPN5 4932
40 5M32 25 k 26S proteasome non-ATPase regulatory subunit 12 9606
41 5T0G 23 W 26S proteasome non-ATPase regulatory subunit 12 9606
42 5T0H 23 W 26S proteasome non-ATPase regulatory subunit 12 9606
43 5T0I 23 W 26S proteasome non-ATPase regulatory subunit 12 9606
44 5T0J 24 W 26S proteasome non-ATPase regulatory subunit 12 9606
45 5T0C 3 AW, BW 26S proteasome non-ATPase regulatory subunit 12 9606
46 5LN3 24 P 26S proteasome non-ATPase regulatory subunit 12 9606
47 5GJQ 23 P 26S proteasome non-ATPase regulatory subunit 12 9606
48 5GJR 9 3, P 26S proteasome non-ATPase regulatory subunit 12 9606
49 5L4K 8 P 26S proteasome non-ATPase regulatory subunit 12 9606
50 3JCO 23 P 26S proteasome regulatory subunit RPN5 4932
51 3JCP 23 P 26S proteasome regulatory subunit RPN5 4932
52 3JCK 2 B 26S proteasome regulatory subunit RPN5 4932
53 5A5B 25 P 26S PROTEASOME REGULATORY SUBUNIT RPN5 4932
54 4CR2 23 P 26S PROTEASOME REGULATORY SUBUNIT RPN5 4932
55 4CR3 23 P 26S PROTEASOME REGULATORY SUBUNIT RPN5 4932
56 4CR4 23 P 26S PROTEASOME REGULATORY SUBUNIT RPN5 4932