6NK5

Electron Cryo-Microscopy Of Chikungunya VLP


Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 10271
95 % 1 4 5075
90 % 6 10 2907
70 % 6 10 2938
50 % 6 11 2544
40 % 6 11 2546
30 % 6 11 2544
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11571
95 % 1 2 10554
90 % 1 4 5230
70 % 1 4 5097
50 % 1 4 4964
40 % 2 14 1394
30 % 2 14 1411
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4220
95 % 2 6 3600
90 % 4 9 2444
70 % 4 9 2517
50 % 20 27 1152
40 % 20 27 1186
30 % 20 27 1228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures