Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9358
95 % 1 4 4747
90 % 6 10 2709
70 % 6 10 2752
50 % 6 11 2378
40 % 6 11 2404
30 % 6 11 2389
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9437
95 % 1 2 9939
90 % 1 4 4859
70 % 1 4 4800
50 % 1 4 4664
40 % 1 13 1398
30 % 1 13 1406
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 3909
95 % 2 6 3332
90 % 4 9 2278
70 % 4 9 2344
50 % 20 27 1052
40 % 20 27 1089
30 % 20 27 1126

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures