Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9491
95 % 1 4 4892
90 % 6 10 2769
70 % 6 10 2770
50 % 6 11 2419
40 % 6 11 2446
30 % 6 11 2424
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11005
95 % 1 2 10077
90 % 1 4 4920
70 % 1 4 4875
50 % 1 4 4735
40 % 1 13 1410
30 % 1 13 1417
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 3980
95 % 2 6 3378
90 % 4 9 2339
70 % 4 9 2412
50 % 20 27 1072
40 % 20 27 1111
30 % 20 27 1143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures