6NK5

Electron Cryo-Microscopy Of Chikungunya VLP


Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 10040
95 % 1 4 5187
90 % 6 10 2927
70 % 6 10 2944
50 % 6 11 2560
40 % 6 11 2552
30 % 6 11 2552
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 10039
95 % 1 2 10511
90 % 1 4 5191
70 % 1 4 5115
50 % 1 4 4980
40 % 2 14 1399
30 % 2 14 1410
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4236
95 % 2 6 3610
90 % 4 9 2458
70 % 4 9 2517
50 % 20 27 1156
40 % 20 27 1188
30 % 20 27 1232

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
2 3N43 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
3 3N42 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1202 37124
4 3N41 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1190 37124
5 6JO8 2 B, D, F CHIKV E1 37124
6 6NK5 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
7 6NK6 2 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
8 6NK7 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124 3.4.21.90 | Details
9 5ANY 1 A, C, E, G E1 37124
10 3J0C 1 A, D, G, J E1 envelope glycoprotein full length (UNP residues 813-1254) 11036
11 2XFC 1 A, D, F, H E1 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 810-1248 37124