6NK5

Electron Cryo-Microscopy Of Chikungunya VLP


Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9915
95 % 1 4 5050
90 % 6 10 2881
70 % 6 10 2923
50 % 6 11 2529
40 % 6 11 2529
30 % 6 11 2522
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11471
95 % 1 2 10460
90 % 1 4 5133
70 % 1 4 5073
50 % 1 4 4931
40 % 2 14 1382
30 % 2 14 1400
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4172
95 % 2 6 3557
90 % 4 9 2411
70 % 4 9 2491
50 % 20 27 1132
40 % 20 27 1167
30 % 20 27 1207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
2 3N43 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
3 3N42 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1202 37124
4 3N41 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1190 37124
5 6JO8 2 B, D, F CHIKV E1 37124
6 6NK5 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
7 6NK6 2 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
8 6NK7 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124 3.4.21.90 | Details
9 5ANY 1 A, C, E, G E1 37124
10 3J0C 1 A, D, G, J E1 envelope glycoprotein full length (UNP residues 813-1254) 11036
11 2XFC 1 A, D, F, H E1 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 810-1248 37124