6NK5

Electron Cryo-Microscopy Of Chikungunya VLP


Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9935
95 % 1 4 5125
90 % 6 10 2888
70 % 6 10 2924
50 % 6 11 2534
40 % 6 11 2539
30 % 6 11 2531
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 9934
95 % 1 2 10424
90 % 1 4 5135
70 % 1 4 5309
50 % 1 4 5145
40 % 2 14 1387
30 % 2 14 1402
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4194
95 % 2 6 3607
90 % 4 9 2422
70 % 4 9 2499
50 % 20 27 1137
40 % 20 27 1168
30 % 20 27 1211

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
2 3N43 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
3 3N42 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1202 37124
4 3N41 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1190 37124
5 6JO8 2 B, D, F CHIKV E1 37124
6 6NK5 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
7 6NK6 2 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
8 6NK7 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124 3.4.21.90 | Details
9 5ANY 1 A, C, E, G E1 37124
10 3J0C 1 A, D, G, J E1 envelope glycoprotein full length (UNP residues 813-1254) 11036
11 2XFC 1 A, D, F, H E1 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 810-1248 37124