Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11076
95 % 1 4 4858
90 % 6 10 2772
70 % 6 10 2811
50 % 6 11 2435
40 % 6 11 2442
30 % 6 11 2428
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11077
95 % 1 2 10167
90 % 1 4 4958
70 % 1 4 5116
50 % 1 4 4956
40 % 1 13 1432
30 % 1 13 1437
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4013
95 % 2 6 3405
90 % 4 9 2328
70 % 4 9 2402
50 % 20 27 1074
40 % 20 27 1112
30 % 20 27 1156

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3N44 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
2 3N43 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1200 37124
3 3N42 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1202 37124
4 3N41 3 F E1 envelope glycoprotein polyprotein fragment residues 810-1190 37124
5 6JO8 2 B, D, F CHIKV E1 37124
6 6NK5 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
7 6NK6 2 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124
8 6NK7 1 A, B, C, D E1 glycoprotein UNP residues 810-1248 37124 3.4.21.90 | Details
9 5ANY 1 A, C, E, G E1 37124
10 3J0C 1 A, D, G, J E1 envelope glycoprotein full length (UNP residues 813-1254) 11036
11 2XFC 1 A, D, F, H E1 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 810-1248 37124