Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11050
95 % 1 4 4868
90 % 6 10 2781
70 % 6 10 2813
50 % 6 11 2437
40 % 6 11 2442
30 % 6 11 2438
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11051
95 % 1 2 10155
90 % 1 4 5187
70 % 1 4 5117
50 % 1 4 4774
40 % 1 13 1431
30 % 1 13 1438
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4013
95 % 2 6 3402
90 % 4 9 2321
70 % 4 9 2400
50 % 20 27 1078
40 % 20 27 1119
30 % 20 27 1162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6NK5 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
2 6NK6 3 E, F, G, H E2 glycoprotein UNP residues 330-748 37124
3 6NK7 2 E, F, G, H E2 glycoprotein UNP residues 330-748 37124 3.4.21.90 | Details
4 6MWV 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
5 6MWX 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
6 6MX4 2 B, E, H, K E2 ectodomain (UNP residues 325-744) 11021
7 6MW9 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
8 6MWC 2 B, F, J, N E2 ectodomain (UNP residues 325-744) 11021
9 6IMM 2 P, V, d, e Spike glycoprotein E2 11034
10 3J0F 3 I, J, K, L E2 envelope glycoprotein UNP residues 329-751 11034
11 3J0C 2 B, E, H, K E2 envelope glycoprotein full length (UNP residues 335-757) 11036
12 2YEW 3 C, F, I, L E2 ENVELOPE GLYCOPROTEIN 11020
13 2XFC 2 B, E, G, I E2 ENVELOPE GLYCOPROTEIN ECTODOMAIN, RESIDUES 326-748 37124