6NK5

Electron Cryo-Microscopy Of Chikungunya VLP


Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 10271
95 % 1 4 5075
90 % 6 10 2907
70 % 6 10 2938
50 % 6 11 2544
40 % 6 11 2546
30 % 6 11 2544
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11571
95 % 1 2 10554
90 % 1 4 5230
70 % 1 4 5097
50 % 1 4 4964
40 % 2 14 1394
30 % 2 14 1411
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4220
95 % 2 6 3600
90 % 4 9 2444
70 % 4 9 2517
50 % 20 27 1152
40 % 20 27 1186
30 % 20 27 1228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4AGK 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
2 4UON 1 A, B CAPSID PROTEASE RESIDUES 110-265 44158 3.4.21.90 | Details
3 4AGJ 1 A CAPSID PROTEIN RESIDUES 110-267 44158 3.4.21.90 | Details
4 1SVP 1 A, B SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID PROTEIN 11034 3.4.21 | Details
5 1WYK 1 A, B, C, D SINDBIS VIRUS CAPSID PROTEIN C-TERMINAL DOMAIN 11034 3.4.21 | Details
6 5H23 1 A, B Capsid Protein 37124
7 5G4B 1 A CAPSID PROTEIN 44158 3.4.21.90 | Details
8 1KXF 1 A SINDBIS VIRUS CAPSID PROTEIN MET 1 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
9 1EP5 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
10 1EP6 1 A, B, C CAPSID PROTEIN C C-TERMINAL DOMAIN 11036 3.4.21 | Details
11 2SNW 1 A, B COAT PROTEIN C 11034 3.4.21 | Details
12 1VCP 1 A, B, C SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM 1 11033
13 1VCQ 1 A, B SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM II 11033
14 1KXB 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
15 2SNV 1 A SINDBIS VIRUS COAT PROTEIN 11034
16 1KXD 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
17 1KXA 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
18 1KXC 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
19 1KXE 1 A SINDBIS VIRUS CAPSID PROTEIN MET 106 - ALA 264 OF THE NATIVE SINDBIS CAPSID 11034 3.4.21 | Details
20 6NK5 3 I, J, K, L Capsid protein UNP residues 111-261 37124
21 6NK6 4 I, J, K, L Capsid protein UNP residues 111-261 37124
22 6NK7 3 I, J, K, L Capsid protein UNP residues 111-261 37124 3.4.21.90 | Details
23 5VU2 3 I, J, K, L capsid protein UNP residues 113-261 37124
24 3J2W 6 I, J, K, L Capsid protein UNP residues 113-261 37124
25 3J0C 3 C, F, I, L Capsid protein C-terminal protease domain (UNP residues 114-275) 11036 3.4.21.90 | Details
26 1Z8Y 5 Q, R, S, T Capsid protein C Capsid protein, residues 114-264 11034 3.4.21 | Details
27 1DYL 1 A, B, C, D NUCLEOCAPSID PROTEIN 11033