Sequence Similarity Clusters for the Entities in PDB 6NK5

Entity #1 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11318
95 % 1 4 5032
90 % 6 10 2825
70 % 6 10 2858
50 % 6 11 2482
40 % 6 11 2482
30 % 6 11 2486
Entity #2 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 11319
95 % 1 2 10340
90 % 1 4 5059
70 % 1 4 5013
50 % 1 4 4874
40 % 2 14 1354
30 % 2 14 1364
Entity #3 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 4380
95 % 2 12 3494
90 % 4 9 2369
70 % 4 9 2439
50 % 20 27 1118
40 % 20 27 1142
30 % 20 27 1185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5H23 1 A, B Capsid Protein 37124
2 1VCP 1 A, B, C SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM 1 11033
3 1VCQ 1 A, B SEMLIKI FOREST VIRUS CAPSID PROTEIN CRYSTAL FORM II 11033
4 6NK5 3 I, J, K, L Capsid protein UNP residues 111-261 37124
5 6NK6 4 I, J, K, L Capsid protein UNP residues 111-261 37124
6 6NK7 3 I, J, K, L Capsid protein UNP residues 111-261 37124 3.4.21.90 | Details
7 5VU2 3 I, J, K, L capsid protein UNP residues 113-261 37124
8 3J2W 6 I, J, K, L Capsid protein UNP residues 113-261 37124
9 1DYL 1 A, B, C, D NUCLEOCAPSID PROTEIN 11033