Sequence Similarity Clusters for the Entities in PDB 6NK6

Entity #1 | Chains: M,N,O,P
Matrix remodeling-associated protein 8 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 9131
95 % 3 4 9340
90 % 3 4 9259
70 % 4 5 6660
50 % 4 5 6344
40 % 4 5 6157
30 % 4 5 5856
Entity #2 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9462
95 % 2 4 4896
90 % 7 10 2741
70 % 7 10 2777
50 % 7 11 2409
40 % 7 11 2427
30 % 7 11 2413
Entity #3 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 10979
95 % 2 2 10055
90 % 2 4 4914
70 % 2 4 4856
50 % 2 4 4730
40 % 2 13 1412
30 % 2 13 1417
Entity #4 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 4258
95 % 3 6 3413
90 % 5 9 2309
70 % 5 9 2384
50 % 21 27 1075
40 % 21 27 1101
30 % 21 27 1143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures