Sequence Similarity Clusters for the Entities in PDB 6NK6

Entity #1 | Chains: M,N,O,P
Matrix remodeling-associated protein 8 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8402
95 % 3 4 8950
90 % 3 4 8905
70 % 4 5 6392
50 % 4 5 6119
40 % 4 5 5945
30 % 4 5 5641
Entity #2 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9553
95 % 2 4 4599
90 % 7 10 2647
70 % 7 10 2706
50 % 7 11 2330
40 % 7 11 2369
30 % 7 11 2353
Entity #3 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9142
95 % 2 2 9653
90 % 2 4 4917
70 % 2 4 4649
50 % 2 4 4524
40 % 2 13 1333
30 % 2 13 1363
Entity #4 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 3785
95 % 3 6 3235
90 % 5 9 2224
70 % 5 9 2293
50 % 21 27 1018
40 % 21 27 1064
30 % 21 27 1097

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures