Sequence Similarity Clusters for the Entities in PDB 6OC3

Entity #1 | Chains: A,C
Heavy chain of FluA-20 Fab protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 19416
95 % 3 3 18045 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 3 17702
70 % 2161 2902 1
50 % 2260 3034 1
40 % 2271 3047 1
30 % 4539 6093 1
Entity #2 | Chains: B,D
Light chain of FluA-20 Fab protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 19415
95 % 3 3 18044 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 394 538 4
70 % 1803 2367 2
50 % 2237 3002 2
40 % 2237 3002 2
30 % 4540 6093 1
Entity #3 | Chains: E,F
Hemagglutinin protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52577
95 % 6 6 9385 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 6 6 9599
70 % 11 11 3498
50 % 22 22 1788
40 % 22 22 1836
30 % 22 23 1802

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures