Sequence Similarity Clusters for the Entities in PDB 6OC3

Entity #1 | Chains: A,C
Heavy chain of FluA-20 Fab protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18741
95 % 3 3 18313 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 3 17958
70 % 2200 2965 1
50 % 2316 3117 1
40 % 2316 3117 1
30 % 4624 6228 1
Entity #2 | Chains: B,D
Light chain of FluA-20 Fab protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18615
95 % 3 3 18076 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 401 553 4
70 % 1834 2416 2
50 % 2277 3067 2
40 % 2277 3067 2
30 % 4625 6228 1
Entity #3 | Chains: E,F
Hemagglutinin protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44772
95 % 6 6 9803 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 6 6 9707
70 % 6 6 9108
50 % 22 22 1815
40 % 22 22 1856
30 % 22 23 1829

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures