Sequence Similarity Clusters for the Entities in PDB 6OC3

Entity #1 | Chains: A,C
Heavy chain of FluA-20 Fab protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18971
95 % 3 3 17664 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 3 17338
70 % 2100 2804 1
50 % 2210 2948 1
40 % 2210 2948 1
30 % 4417 5897 1
Entity #2 | Chains: B,D
Light chain of FluA-20 Fab protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18972
95 % 3 3 17666 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 365 505 4
70 % 1751 2289 2
50 % 2178 2907 2
40 % 2178 2907 2
30 % 4418 5897 1
Entity #3 | Chains: E,F
Hemagglutinin protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51331
95 % 6 6 9391 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 6 6 9338
70 % 11 11 3373
50 % 22 22 1727
40 % 22 22 1786
30 % 22 23 1752

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures