Sequence Similarity Clusters for the Entities in PDB 6OGE

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 3771
95 % 16 16 4404
90 % 16 16 4262
70 % 14 14 5267
50 % 14 14 5073
40 % 38 38 1331
30 % 38 38 1347
Entity #2 | Chains: B
Pertuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27000
95 % 216 223 74
90 % 518 538 4
70 % 2246 2367 2
50 % 2858 3002 2
40 % 2858 3002 2
30 % 5793 6093 1
Entity #3 | Chains: C
Pertuzumab FAB HEAVY CHAIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14220
95 % 7 7 6012
90 % 7 7 6039
70 % 2771 2902 1
50 % 2885 3034 1
40 % 2898 3047 1
30 % 5794 6093 1
Entity #4 | Chains: D
Trastuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17636
95 % 217 223 74
90 % 519 538 4
70 % 2247 2367 2
50 % 2859 3002 2
40 % 2859 3002 2
30 % 5795 6093 1
Entity #5 | Chains: E
Trastuzumab FAB HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 3346
95 % 32 32 1400
90 % 309 318 20
70 % 2772 2902 1
50 % 2886 3034 1
40 % 2899 3047 1
30 % 5796 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures