Sequence Similarity Clusters for the Entities in PDB 6OGE

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 3637
95 % 16 16 4033
90 % 16 16 4334
70 % 14 14 5098
50 % 14 14 4910
40 % 38 38 1296
30 % 38 38 1307
Entity #2 | Chains: B
Pertuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 24891
95 % 191 198 78
90 % 486 505 4
70 % 2173 2289 2
50 % 2770 2907 2
40 % 2770 2907 2
30 % 5613 5897 1
Entity #3 | Chains: C
Pertuzumab FAB HEAVY CHAIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 15191
95 % 7 7 5840
90 % 7 7 5841
70 % 2682 2804 1
50 % 2808 2948 1
40 % 2808 2948 1
30 % 5614 5897 1
Entity #4 | Chains: D
Trastuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17115
95 % 192 198 78
90 % 487 505 4
70 % 2174 2289 2
50 % 2771 2907 2
40 % 2771 2907 2
30 % 5615 5897 1
Entity #5 | Chains: E
Trastuzumab FAB HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 3275
95 % 28 28 1631
90 % 294 303 33
70 % 2683 2804 1
50 % 2809 2948 1
40 % 2809 2948 1
30 % 5616 5897 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures