Sequence Similarity Clusters for the Entities in PDB 6OGE

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 3962
95 % 16 16 4420
90 % 16 16 4304
70 % 14 14 5340
50 % 14 14 5140
40 % 38 38 1349
30 % 38 38 1361
Entity #2 | Chains: B
Pertuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26605
95 % 211 220 74
90 % 533 553 4
70 % 2294 2416 2
50 % 2920 3067 2
40 % 2920 3067 2
30 % 5922 6228 1
Entity #3 | Chains: C
Pertuzumab FAB HEAVY CHAIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17432
95 % 7 7 6106
90 % 7 7 6131
70 % 2831 2965 1
50 % 2965 3117 1
40 % 2965 3117 1
30 % 5923 6228 1
Entity #4 | Chains: D
Trastuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 19000
95 % 212 220 74
90 % 534 553 4
70 % 2295 2416 2
50 % 2921 3067 2
40 % 2921 3067 2
30 % 5924 6228 1
Entity #5 | Chains: E
Trastuzumab FAB HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 3403
95 % 32 32 1425
90 % 327 337 16
70 % 2832 2965 1
50 % 2966 3117 1
40 % 2966 3117 1
30 % 5925 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures