6OGE

Cryo-EM structure of Her2 extracellular domain-Trastuzumab Fab-Pertuzumab Fab complex


Sequence Similarity Clusters for the Entities in PDB 6OGE

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 4162
95 % 16 16 4702
90 % 16 16 4767
70 % 14 14 5682
50 % 14 14 5457
40 % 39 39 1396
30 % 39 39 1412
Entity #2 | Chains: B
Pertuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27271
95 % 250 259 62
90 % 593 613 4
70 % 2456 2584 2
50 % 6373 6686 1
40 % 6374 6687 1
30 % 6415 6734 1
Entity #3 | Chains: C
Pertuzumab FAB HEAVY CHAIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 18398
95 % 7 7 6144
90 % 7 7 6505
70 % 3059 3199 1
50 % 6374 6686 1
40 % 6375 6687 1
30 % 6416 6734 1
Entity #4 | Chains: D
Trastuzumab FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20182
95 % 251 259 62
90 % 594 613 4
70 % 2457 2584 2
50 % 6375 6686 1
40 % 6376 6687 1
30 % 6417 6734 1
Entity #5 | Chains: E
Trastuzumab FAB HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 3572
95 % 32 32 1525
90 % 388 398 12
70 % 3060 3199 1
50 % 6376 6686 1
40 % 6377 6687 1
30 % 6418 6734 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures