6QDV

Human post-catalytic P complex spliceosome


Sequence Similarity Clusters for the Entities in PDB 6QDV

Entity #1 | Chains: 2
U2 snRNA rna, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: D
PRKR-interacting protein 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76261
95 % 1 1 45887
90 % 1 1 43578
70 % 1 1 38348
50 % 1 1 33189
40 % 1 1 30055
30 % 1 1 26565
Entity #11 | Chains: E
Ligated exons: MINX mRNA rna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: F
Cactin protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76262
95 % 1 1 45888
90 % 1 1 43579
70 % 1 1 38349
50 % 1 1 33190
40 % 1 1 30056
30 % 1 1 26566
Entity #13 | Chains: G
Protein FAM32A protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76263
95 % 1 1 45889
90 % 1 1 43580
70 % 1 1 41131
50 % 1 1 33191
40 % 1 1 30057
30 % 1 1 26567
Entity #14 | Chains: H
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 9439
95 % 1 9 10081
90 % 1 9 9736
70 % 1 9 9183
50 % 1 9 8534
40 % 1 9 8194
30 % 1 9 7647
Entity #15 | Chains: I
Intron lariat: MINX RNA rna, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: J
Pleiotropic regulator 1 protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76264
95 % 1 1 45890
90 % 1 1 43581
70 % 1 1 38351
50 % 1 1 33192
40 % 1 1 30058
30 % 1 1 26568
Entity #17 | Chains: K
SNW domain-containing protein 1 protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76265
95 % 1 1 45891
90 % 1 1 43582
70 % 1 1 38352
50 % 1 1 33193
40 % 1 1 30059
30 % 1 1 26569
Entity #18 | Chains: L
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 7675
95 % 1 11 8289
90 % 1 11 8228
70 % 1 11 8009
50 % 5 29 2687
40 % 5 29 2708
30 % 5 29 2695
Entity #19 | Chains: M
Pre-mRNA-splicing factor RBM22 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76258
95 % 1 1 45884
90 % 1 1 46830
70 % 1 1 38346
50 % 1 1 33187
40 % 1 1 30053
30 % 1 1 26563
Entity #2 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: N
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70444
95 % 1 1 57013
90 % 1 1 53761
70 % 1 1 46827
50 % 1 1 40404
40 % 1 1 36522
30 % 2 2 23910
Entity #21 | Chains: O
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 6336
95 % 1 12 7440
90 % 1 12 7442
70 % 1 12 7243
50 % 1 12 6873
40 % 1 12 6664
30 % 1 12 6278
Entity #22 | Chains: P
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 7141
95 % 1 12 7573
90 % 1 12 7561
70 % 1 12 6888
50 % 1 12 6987
40 % 1 12 6353
30 % 1 12 6356
Entity #23 | Chains: R
Serine/arginine repetitive matrix protein 2 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80641
95 % 1 1 57014
90 % 1 1 53762
70 % 1 1 46828
50 % 1 1 40405
40 % 1 1 36523
30 % 1 1 32166
Entity #24 | Chains: S
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 6128
95 % 1 12 7113
90 % 1 12 7111
70 % 1 12 6969
50 % 1 12 6629
40 % 1 12 6447
30 % 1 12 6093
Entity #25 | Chains: T
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 8369
95 % 1 10 9090
90 % 1 10 8586
70 % 1 10 8178
50 % 1 10 8182
40 % 1 10 7408
30 % 1 10 6931
Entity #26 | Chains: U
Intron-binding protein aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 7478
95 % 2 11 8334
90 % 2 11 8281
70 % 2 11 8049
50 % 2 11 7571
40 % 2 11 7290
30 % 2 11 6833
Entity #27 | Chains: V
ATP-dependent RNA helicase DHX8 protein, length: 1220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 58307
95 % 1 4 20610
90 % 1 4 19265
70 % 1 4 21264
50 % 1 4 18806
40 % 1 4 17285
30 % 1 4 15545
Entity #28 | Chains: W
U2 small nuclear ribonucleoprotein A' protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60819
95 % 2 2 29615
90 % 2 2 28544
70 % 2 2 25728
50 % 4 4 11467
40 % 4 4 10774
30 % 4 4 9944
Entity #29 | Chains: Y
U2 small nuclear ribonucleoprotein B'' protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33923
95 % 2 2 29614
90 % 2 2 28543
70 % 71 74 422
50 % 71 74 474
40 % 71 74 503
30 % 71 74 527
Entity #3 | Chains: 6
U6 snRNA rna, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: Z
NF-kappa-B-activating protein protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65041
95 % 1 1 50560
90 % 1 1 47787
70 % 1 1 41921
50 % 1 1 36193
40 % 1 1 32713
30 % 1 1 28906
Entity #31 | Chains: b,k
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 2395
95 % 5 5 3004
90 % 5 5 3084
70 % 5 5 3123
50 % 5 5 3124
40 % 5 5 3124
30 % 5 5 3088
Entity #32 | Chains: c
Pre-mRNA-splicing factor SLU7 protein, length: 586 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 32056
95 % 1 3 27835
90 % 1 3 26879
70 % 1 3 24360
50 % 1 3 21370
40 % 1 3 19552
30 % 1 3 17514
Entity #33 | Chains: d,n
Small nuclear ribonucleoprotein Sm D3 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41021
95 % 1 1 35256
90 % 1 1 33699
70 % 1 1 30090
50 % 1 1 26339
40 % 1 1 23984
30 % 1 1 21354
Entity #34 | Chains: e,p
Small nuclear ribonucleoprotein E protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58192
95 % 1 1 35257
90 % 1 1 40213
70 % 1 1 30092
50 % 1 2 17104
40 % 1 2 15813
30 % 1 2 14269
Entity #35 | Chains: f,q
Small nuclear ribonucleoprotein F protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 14524
95 % 2 2 14787
90 % 2 2 14587
70 % 2 2 13768
50 % 2 2 12519
40 % 2 2 11714
30 % 2 2 10760
Entity #36 | Chains: g,r
Small nuclear ribonucleoprotein G protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 29 493
95 % 14 29 671
90 % 14 29 700
70 % 14 29 725
50 % 18 57 470
40 % 18 58 488
30 % 18 58 509
Entity #37 | Chains: h,l
Small nuclear ribonucleoprotein Sm D1 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 13338
95 % 7 7 8026
90 % 7 7 7892
70 % 7 7 7841
50 % 7 7 7235
40 % 7 7 7106
30 % 7 7 6644
Entity #38 | Chains: i
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5862
95 % 2 13 6655
90 % 2 13 6668
70 % 2 13 6572
50 % 2 13 6276
40 % 2 13 6106
30 % 2 13 5805
Entity #39 | Chains: j,m
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 28 501
95 % 15 30 660
90 % 15 30 693
70 % 15 30 715
50 % 19 58 464
40 % 19 58 491
30 % 19 58 514
Entity #4 | Chains: 7
Eukaryotic initiation factor 4A-III protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 3569
95 % 10 14 3824
90 % 10 14 3890
70 % 13 17 2707
50 % 16 20 2225
40 % 27 31 1595
30 % 35 39 1284
Entity #40 | Chains: o
Pre-mRNA-processing factor 17 protein, length: 513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70287
95 % 1 1 51584
90 % 1 1 48706
70 % 1 1 49834
50 % 1 1 42915
40 % 1 12 6492
30 % 1 12 6134
Entity #41 | Chains: s
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 8283
95 % 1 10 9441
90 % 1 10 9356
70 % 1 10 9084
50 % 1 10 8444
40 % 1 10 8105
30 % 1 10 7564
Entity #42 | Chains: t,u,v,w
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 1303
95 % 1 10 1756
90 % 1 10 1792
70 % 1 10 1831
50 % 1 10 1889
40 % 1 10 1924
30 % 1 11 1737
Entity #43 | Chains: y
Pre-mRNA-splicing factor SYF2 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73907
95 % 1 1 60998
90 % 1 1 57392
70 % 1 1 49832
50 % 1 1 42913
40 % 1 1 38758
30 % 1 1 34092
Entity #44 | Chains: z
Replication stress response regulator SDE2 protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73906
95 % 1 1 60997
90 % 1 1 57391
70 % 1 1 49831
50 % 1 1 42912
40 % 1 1 38757
30 % 1 1 34091
Entity #5 | Chains: 8
RNA-binding protein 8A protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 17586
95 % 4 4 16179
90 % 4 4 16049
70 % 4 4 14905
50 % 4 4 13470
40 % 4 4 12570
30 % 4 4 11487
Entity #6 | Chains: 9
Protein mago nashi homolog 2 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 4954
95 % 7 10 5497
90 % 11 14 3774
70 % 11 14 3791
50 % 11 14 3725
40 % 11 14 3706
30 % 11 14 3606
Entity #7 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 18 3818
95 % 3 18 4417
90 % 3 18 4481
70 % 3 19 4252
50 % 7 41 1791
40 % 7 41 1836
30 % 7 41 1859
Entity #8 | Chains: B
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 1722 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 10000
95 % 11 11 7067
90 % 11 11 6786
70 % 11 11 7636
50 % 15 15 4151
40 % 17 17 3663
30 % 17 17 3510
Entity #9 | Chains: C
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 899 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62977
95 % 3 18 4350
90 % 3 18 4397
70 % 3 18 4397
50 % 3 19 4200
40 % 3 19 4166
30 % 8 42 1797

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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