2J0S

The crystal structure of the Exon Junction Complex at 2.2 A resolution


Structural Similarities for the Entities in PDB 2J0S

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: ATP-DEPENDENT RNA HELICASE DDX48 protein | Length: 410

No structure alignment results are available for 2J0S.A explicitly.

It is represented by chain 3PEY.A which has more than 40% sequence identity.

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Entity #2 | Chains C

Description: PROTEIN MAGO NASHI HOMOLOG protein | Length: 146

No structure alignment results are available for 2J0S.C explicitly.

It is represented by chain 1OO0.a which has more than 90% sequence identity.

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Entity #3 | Chains D

Description: RNA-BINDING PROTEIN 8A protein | Length: 89

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Entity #4 | Chains E

Description: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3' rna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains T

Description: PROTEIN CASC3 protein | Length: 150

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References