4KYI

Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5


Structural Similarities for the Entities in PDB 4KYI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,C,E,G

Description: VipD protein | Length: 551

No structure alignment results are available for 4KYI.A, 4KYI.C, 4KYI.E, 4KYI.G explicitly.

These chains are represented by chain 4AKF.A which is 100% sequence identical.

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Entity #2 | Chains B,D,F,H

Description: Ras-related protein Rab-5C protein | Length: 170

No structure alignment results are available for 4KYI.B, 4KYI.D, 4KYI.F, 4KYI.H explicitly.

These chains are represented by chain XXXX.null which has more than 90% sequence identity.

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References