Structural Similarities for the Entities in PDB 5GGS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C

Description: heavy chain protein | Length: 232

No structure alignment results are available for 5GGS.A, 5GGS.C explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains B,D

Description: light chain protein | Length: 218

No structure alignment results are available for 5GGS.B, 5GGS.D explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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Entity #3 | Chains Y,Z

Description: Programmed cell death protein 1 protein | Length: 123

No structure alignment results are available for 5GGS.Y, 5GGS.Z explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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References