Structural Similarities for the Entities in PDB 5GGT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Programmed cell death 1 ligand 1 protein | Length: 117

No structure alignment results are available for 5GGT.A explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains H

Description: IgG H chain protein | Length: 235

No structure alignment results are available for 5GGT.H explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains L

Description: IGK@ protein protein | Length: 213

No structure alignment results are available for 5GGT.L explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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References