Structural Similarities for the Entities in PDB 5IP7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: DNA-directed RNA polymerase II subunit RPB1 protein | Length: 1732

No structure alignment results are available for 5IP7.A explicitly.

It is represented by chain 1TWF.a which is 100% sequence identical.

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Entity #10 | Chains J

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein | Length: 65

No structure alignment results are available for 5IP7.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

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Entity #11 | Chains K

Description: DNA-directed RNA polymerase II subunit RPB11 protein | Length: 115

No structure alignment results are available for 5IP7.K explicitly.

It is represented by chain 1TWF.k which is 100% sequence identical.

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Entity #12 | Chains L

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein | Length: 46

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Entity #13 | Chains Q

Description: PHE-ILE-LYS-ARG-ASP-ARG-MET-ARG-ARG-ASN-PHE-LEU-ARG-MET-ARG protein | Length: 15

This entity is too short to be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: DNA-directed RNA polymerase II subunit RPB2 protein | Length: 1223

No structure alignment results are available for 5IP7.B explicitly.

It is represented by chain 1TWF.b which is 100% sequence identical.

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Entity #3 | Chains C

Description: DNA-directed RNA polymerase II subunit RPB3 protein | Length: 266

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Entity #4 | Chains D

Description: DNA-directed RNA polymerase II subunit RPB4 protein | Length: 221

No structure alignment results are available for 5IP7.D explicitly.

It is represented by chain 3PO2.D which is 100% sequence identical.

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Entity #5 | Chains E

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein | Length: 214

No structure alignment results are available for 5IP7.E explicitly.

It is represented by chain 1DZF.a which is 100% sequence identical.

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Entity #6 | Chains F

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein | Length: 87

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Entity #7 | Chains G

Description: DNA-directed RNA polymerase II subunit RPB7 protein | Length: 171

No structure alignment results are available for 5IP7.G explicitly.

It is represented by chain 1Y14.b which is 100% sequence identical.

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Entity #8 | Chains H

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein | Length: 145

No structure alignment results are available for 5IP7.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

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Entity #9 | Chains I

Description: DNA-directed RNA polymerase II subunit RPB9 protein | Length: 119

No structure alignment results are available for 5IP7.I explicitly.

It is represented by chain 1TWF.i which is 100% sequence identical.

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References