5XJU

Crystal Structure of the Gemin2-binding domain of SMN, Gemin2dN39 in Complex with SmD1(1-82)/D2.R61A/F/E/G from Human


Structural Similarities for the Entities in PDB 5XJU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains 2

Description: Gem-associated protein 2 protein | Length: 241

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Entity #2 | Chains A

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 82

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Entity #3 | Chains B

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 118

No structure alignment results are available for 5XJU.B explicitly.

It is represented by chain 4F7U.B which has more than 95% sequence identity.

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View how chain 5XJU.B compares with the representative chain PDP:4F7UBa. Select a comparison method:


Entity #4 | Chains E

Description: Small nuclear ribonucleoprotein E protein | Length: 92

No structure alignment results are available for 5XJU.E explicitly.

It is represented by chain 4F7U.E which is 100% sequence identical.

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Entity #5 | Chains F

Description: Small nuclear ribonucleoprotein F protein | Length: 86

No structure alignment results are available for 5XJU.F explicitly.

It is represented by chain 4F7U.F which is 100% sequence identical.

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Entity #6 | Chains G

Description: Small nuclear ribonucleoprotein G protein | Length: 76

No structure alignment results are available for 5XJU.G explicitly.

It is represented by chain 4F7U.G which is 100% sequence identical.

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Entity #7 | Chains M

Description: Survival motor neuron protein protein | Length: 37

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References