Structural Similarities for the Entities in PDB 6DDF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Guanine nucleotide-binding protein G(i) subunit alpha-1 protein | Length: 354

No structure alignment results are available for 6DDF.A explicitly.

It is represented by chain 4N0D.A which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein | Length: 344

No structure alignment results are available for 6DDF.B explicitly.

It is represented by chain 5KDO.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein | Length: 71

No structure alignment results are available for 6DDF.C explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains R

Description: Mu-type opioid receptor protein | Length: 356

No structure alignment results are available for 6DDF.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains D

Description: DAMGO protein | Length: 5

This entity is too short to be considered for the all vs. all structure alignments.


References