Structural Similarities for the Entities in PDB 6DRD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing ALL results. Show only significant results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: DNA-directed RNA polymerase II subunit RPB1 protein | Length: 1970

No structure alignment results are available for 6DRD.A explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.A compares with the representative chain xxxx. Select a comparison method:


Entity #10 | Chains J

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein | Length: 67

No structure alignment results are available for 6DRD.J explicitly.

It is represented by chain 4C2M.J which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.J compares with the representative chain PDP:4C2MJa. Select a comparison method:


Entity #11 | Chains K

Description: DNA-directed RNA polymerase II subunit RPB11-a protein | Length: 117

No structure alignment results are available for 6DRD.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.K compares with the representative chain xxxx. Select a comparison method:


Entity #12 | Chains L

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein | Length: 58

No structure alignment results are available for 6DRD.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.L compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains M

Description: DNA-directed RNA polymerase II subunit GRINL1A protein | Length: 62

Entity #2 | Chains B

Description: DNA-directed RNA polymerase II subunit RPB2 protein | Length: 1174

No structure alignment results are available for 6DRD.B explicitly.

It is represented by chain 1TWF.b which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.B compares with the representative chain d1twfb_. Select a comparison method:


Entity #3 | Chains C

Description: DNA-directed RNA polymerase II subunit RPB3 protein | Length: 275

No structure alignment results are available for 6DRD.C explicitly.

It is represented by chain 5IP7.C which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.C compares with the representative chain PDP:5IP7Ca. Select a comparison method:


Entity #4 | Chains D

Description: DNA-directed RNA polymerase II subunit RPB4 protein | Length: 142

No structure alignment results are available for 6DRD.D explicitly.

It is represented by chain 2C35.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.D compares with the representative chain d2c35a1. Select a comparison method:


Entity #5 | Chains E

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein | Length: 210

No structure alignment results are available for 6DRD.E explicitly.

It is represented by chain 1DZF.a which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.E compares with the representative chain d1dzfa1. Select a comparison method:


Entity #6 | Chains F

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein | Length: 127

No structure alignment results are available for 6DRD.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.F compares with the representative chain xxxx. Select a comparison method:


Entity #7 | Chains G

Description: DNA-directed RNA polymerase II subunit RPB7 protein | Length: 172

No structure alignment results are available for 6DRD.G explicitly.

It is represented by chain 1Y14.b which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6DRD.G compares with the representative chain d1y14b1. Select a comparison method:


Entity #8 | Chains H

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein | Length: 150

No structure alignment results are available for 6DRD.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.H compares with the representative chain xxxx. Select a comparison method:


Entity #9 | Chains I

Description: DNA-directed RNA polymerase II subunit RPB9 protein | Length: 125

No structure alignment results are available for 6DRD.I explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6DRD.I compares with the representative chain xxxx. Select a comparison method:


References