Structural Similarities for the Entities in PDB 6FF4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1

Description: RNA-binding motif protein, X-linked 2 protein | Length: 322

No structure alignment results are available for 6FF4.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains C

Description: SNW domain-containing protein 1 protein | Length: 536

No structure alignment results are available for 6FF4.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains D

Description: Pleiotropic regulator 1 protein | Length: 514

No structure alignment results are available for 6FF4.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains E

Description: Pre-mRNA-processing factor 17 protein | Length: 579

No structure alignment results are available for 6FF4.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #13 | Chains L

Description: Cell division cycle 5-like protein protein | Length: 802

No structure alignment results are available for 6FF4.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains O

Description: Crooked neck-like protein 1 protein | Length: 848

No structure alignment results are available for 6FF4.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains P

Description: Pre-mRNA-splicing factor RBM22 protein | Length: 420

No structure alignment results are available for 6FF4.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains Q

Description: Protein BUD31 homolog protein | Length: 144

No structure alignment results are available for 6FF4.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains R

Description: Spliceosome-associated protein CWC15 homolog protein | Length: 229

No structure alignment results are available for 6FF4.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains S

Description: Serine/arginine repetitive matrix protein 2 protein | Length: 2752

No structure alignment results are available for 6FF4.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains V

Description: Peptidyl-prolyl cis-trans isomerase-like 1 protein | Length: 166

No structure alignment results are available for 6FF4.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 2

Description: U2 snRNA rna | Length: 188

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains Y

Description: Serine/arginine repetitive matrix protein 1 protein | Length: 904

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Entity #21 | Chains Z

Description: pre mRNA rna | Length: 478

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #22 | Chains s

Description: Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein | Length: 472

No structure alignment results are available for 6FF4.s explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains t

Description: RING finger protein 113A protein | Length: 343

No structure alignment results are available for 6FF4.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains u

Description: Splicing factor 3B subunit 1 protein | Length: 1304

No structure alignment results are available for 6FF4.u explicitly.

It is represented by chain 5IFE.C which is 100% sequence identical.

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Entity #25 | Chains v

Description: Splicing factor 3B subunit 3 protein | Length: 1217

No structure alignment results are available for 6FF4.v explicitly.

It is represented by chain 5HY7.A which has more than 50% sequence identity.

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Entity #26 | Chains x

Description: Splicing factor 3B subunit 5 protein | Length: 86

No structure alignment results are available for 6FF4.x explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains y

Description: PHD finger-like domain-containing protein 5A protein | Length: 110

No structure alignment results are available for 6FF4.y explicitly.

It is represented by chain 5SYB.A which has more than 95% sequence identity.

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Entity #28 | Chains z

Description: Splicing factor 3B subunit 6 protein | Length: 125

No structure alignment results are available for 6FF4.z explicitly.

It is represented by chain 3LQV.A which has more than 95% sequence identity.

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Entity #3 | Chains 3

Description: BUD13 homolog protein | Length: 619

No structure alignment results are available for 6FF4.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains 5

Description: U5 snRNA rna | Length: 116

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains 6

Description: U6 snRNA rna | Length: 107

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains 7

Description: Splicing factor 3A subunit 2 protein | Length: 464

No structure alignment results are available for 6FF4.7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains 8

Description: Splicing factor 3B subunit 2 protein | Length: 895

No structure alignment results are available for 6FF4.8 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains A

Description: Pre-mRNA-processing-splicing factor 8 protein | Length: 2335

No structure alignment results are available for 6FF4.A explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains B

Description: 116 kDa U5 small nuclear ribonucleoprotein component protein | Length: 972

No structure alignment results are available for 6FF4.B explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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References