6GZ3

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)


Structural Similarities for the Entities in PDB 6GZ3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A2

Description: 28S ribosomal RNA rna | Length: 3612

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains BP

Description: ribosomal protein uS19 protein | Length: 120

No structure alignment results are available for 6GZ3.BP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains BQ

Description: ribosomal protein uS9 protein | Length: 139

No structure alignment results are available for 6GZ3.BQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains BR

Description: ribosomal protein eS17 protein | Length: 125

No structure alignment results are available for 6GZ3.BR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains BS

Description: ribosomal protein uS13 protein | Length: 139

No structure alignment results are available for 6GZ3.BS explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #14 | Chains BT

Description: ribosomal protein eS19 protein | Length: 143

No structure alignment results are available for 6GZ3.BT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains BU

Description: ribosomal protein uS10 protein | Length: 97

No structure alignment results are available for 6GZ3.BU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains BZ

Description: ribosomal protein eS25 protein | Length: 86

No structure alignment results are available for 6GZ3.BZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Bc

Description: Ribosomal protein S28 protein | Length: 62

No structure alignment results are available for 6GZ3.Bc explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #18 | Chains Bd

Description: ribosomal protein uS14 protein | Length: 51

No structure alignment results are available for 6GZ3.Bd explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #19 | Chains Bf

Description: Ribosomal protein S27a protein | Length: 73

No structure alignment results are available for 6GZ3.Bf explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains Bv

Description: ap/P-site tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains Bg

Description: ribosomal protein RACK 1 protein | Length: 314

No structure alignment results are available for 6GZ3.Bg explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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Entity #21 | Chains BA

Description: ribosomal protein uS2 protein | Length: 215

No structure alignment results are available for 6GZ3.BA explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #22 | Chains BB

Description: 40S ribosomal protein S3a protein | Length: 212

No structure alignment results are available for 6GZ3.BB explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains BC

Description: ribosomal protein uS5 protein | Length: 222

No structure alignment results are available for 6GZ3.BC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains BE

Description: ribosomal protein eS4 protein | Length: 257

No structure alignment results are available for 6GZ3.BE explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #25 | Chains BG

Description: 40S ribosomal protein S6 protein | Length: 232

No structure alignment results are available for 6GZ3.BG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains BH

Description: 40S ribosomal protein S7 protein | Length: 183

No structure alignment results are available for 6GZ3.BH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains BI

Description: ribosomal protein eS8 protein | Length: 207

No structure alignment results are available for 6GZ3.BI explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains BJ

Description: Ribosomal protein S9 (Predicted) protein | Length: 179

No structure alignment results are available for 6GZ3.BJ explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains BL

Description: Ribosomal protein S11 protein | Length: 153

No structure alignment results are available for 6GZ3.BL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains Bx

Description: mRNA rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains BN

Description: ribosomal protein uS15 protein | Length: 149

No structure alignment results are available for 6GZ3.BN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #31 | Chains BO

Description: ribosomal protein uS11 protein | Length: 136

No structure alignment results are available for 6GZ3.BO explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #32 | Chains BV

Description: ribosomal protein eS21 protein | Length: 81

No structure alignment results are available for 6GZ3.BV explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains BW

Description: Ribosomal protein S15a protein | Length: 129

No structure alignment results are available for 6GZ3.BW explicitly.

It is represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #34 | Chains BX

Description: Ribosomal protein S23 protein | Length: 141

No structure alignment results are available for 6GZ3.BX explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #35 | Chains BY

Description: ribosomal protein eS24 protein | Length: 125

No structure alignment results are available for 6GZ3.BY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains Ba

Description: ribosomal protein eS26 protein | Length: 97

No structure alignment results are available for 6GZ3.Ba explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains Bb

Description: ribosomal protein eS27 protein | Length: 80

No structure alignment results are available for 6GZ3.Bb explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #38 | Chains Be

Description: ribosomal protein eS30 protein | Length: 55

No structure alignment results are available for 6GZ3.Be explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains A3

Description: 5.8S ribosomal RNA rna | Length: 157

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains Bw

Description: pe/E-site-tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #40 | Chains A4

Description: 5S ribosomal RNA rna | Length: 119

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #41 | Chains AA

Description: Ribosomal protein L8 protein | Length: 252

No structure alignment results are available for 6GZ3.AA explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #42 | Chains AB

Description: ribosomal protein uL3 protein | Length: 394

No structure alignment results are available for 6GZ3.AB explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #43 | Chains AC

Description: ribosomal protein uL4 protein | Length: 363

No structure alignment results are available for 6GZ3.AC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains AD

Description: ribosomal protein uL18 protein | Length: 294

No structure alignment results are available for 6GZ3.AD explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #45 | Chains AE

Description: ribosomal protein eL6 protein | Length: 194

No structure alignment results are available for 6GZ3.AE explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #46 | Chains AF

Description: ribosomal protein uL30 protein | Length: 234

No structure alignment results are available for 6GZ3.AF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #47 | Chains AG

Description: ribosomal protein eL8 protein | Length: 234

No structure alignment results are available for 6GZ3.AG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #48 | Chains AH

Description: ribosomal protein uL6 protein | Length: 191

No structure alignment results are available for 6GZ3.AH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #49 | Chains AI

Description: Ribosomal protein L10 (Predicted) protein | Length: 211

No structure alignment results are available for 6GZ3.AI explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains B1

Description: 18S ribosomal RNA rna | Length: 1708

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #50 | Chains AJ

Description: Ribosomal protein L11 protein | Length: 169

No structure alignment results are available for 6GZ3.AJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains AL

Description: ribosomal protein eL13 protein | Length: 205

No structure alignment results are available for 6GZ3.AL explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #52 | Chains AM

Description: ribosomal protein eL14 protein | Length: 139

No structure alignment results are available for 6GZ3.AM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains AN

Description: Ribosomal protein L15 protein | Length: 203

No structure alignment results are available for 6GZ3.AN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #54 | Chains AO

Description: ribosomal protein uL13 protein | Length: 195

No structure alignment results are available for 6GZ3.AO explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #55 | Chains AP

Description: ribosomal protein uL22 protein | Length: 153

No structure alignment results are available for 6GZ3.AP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains AQ

Description: ribosomal protein eL18 protein | Length: 187

No structure alignment results are available for 6GZ3.AQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #57 | Chains AR

Description: ribosomal protein eL19 protein | Length: 181

No structure alignment results are available for 6GZ3.AR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #58 | Chains AS

Description: ribosomal protein eL20 protein | Length: 175

No structure alignment results are available for 6GZ3.AS explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #59 | Chains AT

Description: ribosomal protein eL21 protein | Length: 157

No structure alignment results are available for 6GZ3.AT explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains BD

Description: ribosomal protein uS3 protein | Length: 220

No structure alignment results are available for 6GZ3.BD explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #60 | Chains AU

Description: ribosomal protein eL22 protein | Length: 99

No structure alignment results are available for 6GZ3.AU explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #61 | Chains AV

Description: Ribosomal protein L23 protein | Length: 129

No structure alignment results are available for 6GZ3.AV explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #62 | Chains AW

Description: ribosomal protein eL24 protein | Length: 121

No structure alignment results are available for 6GZ3.AW explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains AX

Description: ribosomal protein uL23 protein | Length: 117

No structure alignment results are available for 6GZ3.AX explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #64 | Chains AY

Description: Ribosomal protein L26 protein | Length: 127

No structure alignment results are available for 6GZ3.AY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #65 | Chains AZ

Description: 60S ribosomal protein L27 protein | Length: 134

No structure alignment results are available for 6GZ3.AZ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #66 | Chains Aa

Description: ribosomal protein uL15 protein | Length: 147

No structure alignment results are available for 6GZ3.Aa explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #67 | Chains Ab

Description: ribosomal protein eL29 protein | Length: 68

No structure alignment results are available for 6GZ3.Ab explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #68 | Chains Ac

Description: ribosomal protein eL30 protein | Length: 103

No structure alignment results are available for 6GZ3.Ac explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #69 | Chains Ad

Description: ribosomal protein eL31 protein | Length: 106

No structure alignment results are available for 6GZ3.Ad explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains BF

Description: Ribosomal protein S5 protein | Length: 190

No structure alignment results are available for 6GZ3.BF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #70 | Chains Ae

Description: ribosomal protein eL32 protein | Length: 129

No structure alignment results are available for 6GZ3.Ae explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #71 | Chains Af

Description: ribosomal protein eL33 protein | Length: 109

No structure alignment results are available for 6GZ3.Af explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #72 | Chains Ag

Description: ribosomal protein eL34 protein | Length: 114

No structure alignment results are available for 6GZ3.Ag explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #73 | Chains Ah

Description: ribosomal protein uL29 protein | Length: 122

No structure alignment results are available for 6GZ3.Ah explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #74 | Chains Ai

Description: ribosomal protein eL36 protein | Length: 97

No structure alignment results are available for 6GZ3.Ai explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #75 | Chains Aj

Description: Ribosomal protein L37 protein | Length: 84

No structure alignment results are available for 6GZ3.Aj explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #76 | Chains Ak

Description: ribosomal protein eL38 protein | Length: 69

No structure alignment results are available for 6GZ3.Ak explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #77 | Chains Al

Description: ribosomal protein eL39 protein | Length: 50

No structure alignment results are available for 6GZ3.Al explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #78 | Chains Am

Description: ribosomal protein eL40 protein | Length: 50

No structure alignment results are available for 6GZ3.Am explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #79 | Chains An

Description: ribosomal protein eL41 protein | Length: 25

No structure alignment results are available for 6GZ3.An explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #8 | Chains BK

Description: ribosomal protein eS10 protein | Length: 98

No structure alignment results are available for 6GZ3.BK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #80 | Chains Ao

Description: ribosomal protein eL42 protein | Length: 105

No structure alignment results are available for 6GZ3.Ao explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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