Structural Similarities for the Entities in PDB 6IMM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains N,T,Z,a

Description: Spike glycoprotein E1 protein | Length: 439

No structure alignment results are available for 6IMM.N, 6IMM.T, 6IMM.Z, 6IMM.a explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #2 | Chains P,V,d,e

Description: Spike glycoprotein E2 protein | Length: 388

No structure alignment results are available for 6IMM.P, 6IMM.V, 6IMM.d, 6IMM.e explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains R,X,h,i

Description: Assembly protein E3 protein | Length: 69

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References