6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Structural Similarities for the Entities in PDB 6J0N

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains D,E,F,G,H,I

Description: Pvc9 protein | Length: 140

No structure alignment results are available for 6J0N.D, 6J0N.E, 6J0N.F, 6J0N.G, 6J0N.H, 6J0N.I explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #2 | Chains J,K,L,M,N,O

Description: Pvc11 protein | Length: 728

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Entity #3 | Chains P,Q,R,S,T,U

Description: Pvc12 protein | Length: 950

No structure alignment results are available for 6J0N.P, 6J0N.Q, 6J0N.R, 6J0N.S, 6J0N.T, 6J0N.U explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains V,W,X,Y,Z,a

Description: Pvc4 protein | Length: 410

No structure alignment results are available for 6J0N.V, 6J0N.W, 6J0N.X, 6J0N.Y, 6J0N.Z, 6J0N.a explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains b,c,d,e,f,g

Description: Pvc7 protein | Length: 229

No structure alignment results are available for 6J0N.b, 6J0N.c, 6J0N.d, 6J0N.e, 6J0N.f, 6J0N.g explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains h,i,j,k,l,m

Description: Pvc2 protein | Length: 355

No structure alignment results are available for 6J0N.h, 6J0N.i, 6J0N.j, 6J0N.k, 6J0N.l, 6J0N.m explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #7 | Chains n,o,p,q,r,s

Description: Pvc5 protein | Length: 152

No structure alignment results are available for 6J0N.n, 6J0N.o, 6J0N.p, 6J0N.q, 6J0N.r, 6J0N.s explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains 1,2,3,4,5,z

Description: Pvc1 protein | Length: 149

No structure alignment results are available for 6J0N.1, 6J0N.2, 6J0N.3, 6J0N.4, 6J0N.5, 6J0N.z explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #9 | Chains t,u,v,w,x,y

Description: Pvc3 protein | Length: 440

No structure alignment results are available for 6J0N.t, 6J0N.u, 6J0N.v, 6J0N.w, 6J0N.x, 6J0N.y explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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References