Structural Similarities for the Entities in PDB 6J2X

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1,b

Description: Proteasome subunit beta type-1 protein | Length: 215

No structure alignment results are available for 6J2X.1, 6J2X.b explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.b compares with the representative chain PDP:4R17Na. Select a comparison method:


Entity #10 | Chains C,d

Description: Proteasome subunit alpha type-3 protein | Length: 258

No structure alignment results are available for 6J2X.C, 6J2X.d explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.d compares with the representative chain xxxx. Select a comparison method:


Entity #11 | Chains D,n

Description: Proteasome subunit alpha type-4 protein | Length: 254

No structure alignment results are available for 6J2X.D, 6J2X.n explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.n compares with the representative chain xxxx. Select a comparison method:


Entity #12 | Chains E,m

Description: Proteasome subunit alpha type-5 protein | Length: 260

No structure alignment results are available for 6J2X.E, 6J2X.m explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.m compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains F,l

Description: Proteasome subunit alpha type-6 protein | Length: 234

No structure alignment results are available for 6J2X.F, 6J2X.l explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.l compares with the representative chain PDP:4R17Ea. Select a comparison method:


Entity #14 | Chains G,k

Description: Probable proteasome subunit alpha type-7 protein | Length: 288

No structure alignment results are available for 6J2X.G, 6J2X.k explicitly.

These chains are represented by chain 4R17.F which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.k compares with the representative chain PDP:4R17Fa. Select a comparison method:


Entity #15 | Chains H

Description: 26S proteasome regulatory subunit 7 homolog protein | Length: 467

  Loading...

Entity #16 | Chains I

Description: 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG protein | Length: 437

  Loading...

Entity #17 | Chains J

Description: 26S proteasome regulatory subunit 8 homolog protein | Length: 405

  Loading...

Entity #18 | Chains K

Description: 26S proteasome regulatory subunit 6B homolog protein | Length: 428

  Loading...

Entity #19 | Chains L

Description: 26S proteasome subunit RPT4 protein | Length: 437

No structure alignment results are available for 6J2X.L explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.L compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains 2,i

Description: Proteasome subunit beta type-2 protein | Length: 261

No structure alignment results are available for 6J2X.2, 6J2X.i explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.i compares with the representative chain PDP:5LE5Ha. Select a comparison method:


Entity #20 | Chains M

Description: 26S proteasome regulatory subunit 6A protein | Length: 434

  Loading...

Entity #21 | Chains N

Description: 26S proteasome regulatory subunit RPN2 protein | Length: 945

No structure alignment results are available for 6J2X.N explicitly.

It is represented by chain 4ADY.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.N compares with the representative chain PDP:4ADYAa. Select a comparison method:


Entity #22 | Chains O

Description: 26S proteasome regulatory subunit RPN9 protein | Length: 393

  Loading...

Entity #23 | Chains P

Description: 26S PROTEASOME REGULATORY SUBUNIT RPN5 protein | Length: 445

  Loading...

Entity #24 | Chains Q

Description: 26S proteasome regulatory subunit RPN6 protein | Length: 434

  Loading...

Entity #25 | Chains R

Description: 26S proteasome regulatory subunit RPN7 protein | Length: 429

  Loading...

Entity #26 | Chains S

Description: 26S proteasome regulatory subunit RPN3 protein | Length: 523

  Loading...

Entity #27 | Chains T

Description: 26S proteasome regulatory subunit RPN12 protein | Length: 274

  Loading...

Entity #28 | Chains U

Description: 26S proteasome regulatory subunit RPN8 protein | Length: 338

No structure alignment results are available for 6J2X.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.U compares with the representative chain xxxx. Select a comparison method:


Entity #29 | Chains V

Description: Ubiquitin carboxyl-terminal hydrolase RPN11 protein | Length: 306

  Loading...

Entity #3 | Chains 3,h

Description: Proteasome subunit beta type-3 protein | Length: 205

No structure alignment results are available for 6J2X.3, 6J2X.h explicitly.

These chains are represented by chain 5LE5.I which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.h compares with the representative chain PDP:5LE5Ia. Select a comparison method:


Entity #30 | Chains W

Description: 26S proteasome regulatory subunit RPN10 protein | Length: 268

  Loading...

Entity #31 | Chains X

Description: 26S proteasome regulatory subunit RPN13 protein | Length: 156

  Loading...

Entity #32 | Chains Y

Description: 26S proteasome complex subunit SEM1 protein | Length: 89

No structure alignment results are available for 6J2X.Y explicitly.

It is represented by chain 5UBP.C which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.Y compares with the representative chain PDP:5UBPC_. Select a comparison method:


Entity #33 | Chains Z

Description: 26S proteasome regulatory subunit RPN1 protein | Length: 993

  Loading...

Entity #4 | Chains 4,g

Description: Proteasome subunit beta type-4 protein | Length: 198

No structure alignment results are available for 6J2X.4, 6J2X.g explicitly.

These chains are represented by chain 5LE5.J which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.g compares with the representative chain PDP:5LE5Ja. Select a comparison method:


Entity #5 | Chains 5,f

Description: Proteasome subunit beta type-5 protein | Length: 287

No structure alignment results are available for 6J2X.5, 6J2X.f explicitly.

These chains are represented by chain 4X6Z.L which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.f compares with the representative chain PDP:4X6ZLa. Select a comparison method:


Entity #6 | Chains 6,e

Description: PROTEASOME COMPONENT C5 protein | Length: 241

No structure alignment results are available for 6J2X.6, 6J2X.e explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.e compares with the representative chain PDP:4R17La. Select a comparison method:


Entity #7 | Chains 7,a

Description: Proteasome subunit beta type-7 protein | Length: 266

No structure alignment results are available for 6J2X.7, 6J2X.a explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 6J2X.a compares with the representative chain PDP:4R17Ma. Select a comparison method:


Entity #8 | Chains A,c

Description: Proteasome subunit alpha type-1 protein | Length: 252

No structure alignment results are available for 6J2X.A, 6J2X.c explicitly.

These chains are represented by chain 5LE5.G which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.c compares with the representative chain PDP:5LE5Ga. Select a comparison method:


Entity #9 | Chains B,j

Description: Proteasome subunit alpha type-2 protein | Length: 250

No structure alignment results are available for 6J2X.B, 6J2X.j explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6J2X.j compares with the representative chain PDP:5LE5Aa. Select a comparison method:


References