6J6G

Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom


Structural Similarities for the Entities in PDB 6J6G

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Pre-mRNA-splicing factor 8 protein | Length: 2413

No structure alignment results are available for 6J6G.A explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #10 | Chains Z

Description: Pre-mRNA-splicing factor CWC22 protein | Length: 577

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Entity #11 | Chains c

Description: Pre-mRNA-splicing factor CEF1 protein | Length: 590

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Entity #12 | Chains d

Description: Pre-mRNA-splicing factor CLF1 protein | Length: 687

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Entity #13 | Chains I

Description: Pre-mRNA-splicing factor SYF2 protein | Length: 215

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Entity #14 | Chains n

Description: Pre-mRNA-processing factor 17 protein | Length: 455

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Entity #15 | Chains H

Description: Pre-mRNA-splicing factor ISY1 protein | Length: 235

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Entity #16 | Chains B

Description: ACT1 pre-mRNA rna | Length: 679

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #17 | Chains D

Description: U5 snRNA rna | Length: 214

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #18 | Chains E

Description: U6 snRNA rna | Length: 112

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #19 | Chains L

Description: U2 snRNA rna | Length: 1175

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C

Description: Pre-mRNA-splicing factor SNU114 protein | Length: 1008

No structure alignment results are available for 6J6G.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains v

Description: Pre-mRNA-splicing factor SYF1 protein | Length: 859

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Entity #21 | Chains a

Description: U2 small nuclear ribonucleoprotein B'' protein | Length: 111

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Entity #22 | Chains b

Description: U2 small nuclear ribonucleoprotein A' protein | Length: 238

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Entity #23 | Chains t

Description: Pre-mRNA-splicing factor SNT309 protein | Length: 175

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Entity #24 | Chains i,u

Description: Small nuclear ribonucleoprotein E protein | Length: 94

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Entity #25 | Chains m,z

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 146

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Entity #26 | Chains j,x

Description: Small nuclear ribonucleoprotein G protein | Length: 77

No structure alignment results are available for 6J6G.j, 6J6G.x explicitly.

These chains are represented by chain 4F7U.G which has more than 50% sequence identity.

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Entity #27 | Chains h,w

Description: Small nuclear ribonucleoprotein F protein | Length: 86

No structure alignment results are available for 6J6G.h, 6J6G.w explicitly.

These chains are represented by chain 1N9R.a which is 100% sequence identical.

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Entity #28 | Chains e,g

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 110

No structure alignment results are available for 6J6G.e, 6J6G.g explicitly.

These chains are represented by chain 4F7U.B which has more than 50% sequence identity.

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Entity #29 | Chains k,s

Description: Small nuclear ribonucleoprotein-associated protein B protein | Length: 196

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Entity #3 | Chains J

Description: Pre-mRNA-splicing factor CWC21 protein | Length: 135

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Entity #30 | Chains l,y

Description: Small nuclear ribonucleoprotein Sm D3 protein | Length: 101

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Entity #31 | Chains o,p,q,r

Description: Pre-mRNA-processing factor 19 protein | Length: 503

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Entity #4 | Chains O

Description: Pre-mRNA-splicing factor PRP46 protein | Length: 451

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Entity #5 | Chains P

Description: Pre-mRNA-processing protein 45 protein | Length: 379

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Entity #6 | Chains Q

Description: Pre-mRNA-splicing factor SLT11 protein | Length: 364

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Entity #7 | Chains R

Description: Pre-mRNA-splicing factor CWC2 protein | Length: 339

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Entity #8 | Chains S

Description: Pre-mRNA-splicing factor CWC15 protein | Length: 175

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Entity #9 | Chains T

Description: Pre-mRNA-splicing factor BUD31 protein | Length: 157

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References