6MSB

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome


Structural Similarities for the Entities in PDB 6MSB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains U

Description: 26S proteasome non-ATPase regulatory subunit 1 protein | Length: 953

No structure alignment results are available for 6MSB.U explicitly.

It is represented by chain 4ADY.A which has more than 40% sequence identity.

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Entity #10 | Chains d

Description: 26S proteasome non-ATPase regulatory subunit 8 protein | Length: 349

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Entity #11 | Chains e

Description: 26S proteasome complex subunit SEM1 protein | Length: 70

No structure alignment results are available for 6MSB.e explicitly.

It is represented by chain 3T5X.B which is 100% sequence identical.

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Entity #12 | Chains f

Description: 26S proteasome non-ATPase regulatory subunit 2 protein | Length: 908

No structure alignment results are available for 6MSB.f explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #13 | Chains A

Description: 26S proteasome regulatory subunit 7 protein | Length: 433

No structure alignment results are available for 6MSB.A explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #14 | Chains B

Description: 26S proteasome regulatory subunit 4 protein | Length: 440

No structure alignment results are available for 6MSB.B explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains C

Description: 26S proteasome regulatory subunit 8 protein | Length: 398

No structure alignment results are available for 6MSB.C explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains D

Description: 26S proteasome regulatory subunit 6B protein | Length: 418

No structure alignment results are available for 6MSB.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains E

Description: 26S proteasome regulatory subunit 10B protein | Length: 403

No structure alignment results are available for 6MSB.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #18 | Chains F

Description: 26S proteasome regulatory subunit 6A protein | Length: 439

No structure alignment results are available for 6MSB.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains u,w

Description: Ubiquitin protein | Length: 76

No structure alignment results are available for 6MSB.u, 6MSB.w explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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Entity #2 | Chains V

Description: 26S proteasome non-ATPase regulatory subunit 3 protein | Length: 534

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Entity #20 | Chains G,g

Description: Proteasome subunit alpha type-6 protein | Length: 245

No structure alignment results are available for 6MSB.G, 6MSB.g explicitly.

These chains are represented by chain 5LE5.G which is 100% sequence identical.

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Entity #21 | Chains H,h

Description: Proteasome subunit alpha type-2 protein | Length: 233

No structure alignment results are available for 6MSB.H, 6MSB.h explicitly.

These chains are represented by chain 5LE5.A which is 100% sequence identical.

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Entity #22 | Chains I,i

Description: Proteasome subunit alpha type-4 protein | Length: 260

No structure alignment results are available for 6MSB.I, 6MSB.i explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains J,j

Description: Proteasome subunit alpha type-7 protein | Length: 247

No structure alignment results are available for 6MSB.J, 6MSB.j explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains K,k

Description: Proteasome subunit alpha type-5 protein | Length: 240

No structure alignment results are available for 6MSB.K, 6MSB.k explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains L,l

Description: Proteasome subunit alpha type-1 protein | Length: 268

No structure alignment results are available for 6MSB.L, 6MSB.l explicitly.

These chains are represented by chain 5LE5.E which is 100% sequence identical.

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Entity #26 | Chains M,m

Description: Proteasome subunit alpha type-3 protein | Length: 254

No structure alignment results are available for 6MSB.M, 6MSB.m explicitly.

These chains are represented by chain 5LE5.F which is 100% sequence identical.

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Entity #27 | Chains N,n

Description: Proteasome subunit beta type-6 protein | Length: 238

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Entity #28 | Chains O,o

Description: Proteasome subunit beta type-7 protein | Length: 276

No structure alignment results are available for 6MSB.O, 6MSB.o explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #29 | Chains P,p

Description: Proteasome subunit beta type-3 protein | Length: 204

No structure alignment results are available for 6MSB.P, 6MSB.p explicitly.

These chains are represented by chain 5LE5.I which is 100% sequence identical.

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Entity #3 | Chains W

Description: 26S proteasome non-ATPase regulatory subunit 12 protein | Length: 456

No structure alignment results are available for 6MSB.W explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #30 | Chains Q,q

Description: Proteasome subunit beta type-2 protein | Length: 201

No structure alignment results are available for 6MSB.Q, 6MSB.q explicitly.

These chains are represented by chain 5LE5.J which is 100% sequence identical.

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Entity #31 | Chains R,r

Description: Proteasome subunit beta type-5 protein | Length: 262

No structure alignment results are available for 6MSB.R, 6MSB.r explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains S,s

Description: Proteasome subunit beta type-1 protein | Length: 240

No structure alignment results are available for 6MSB.S, 6MSB.s explicitly.

These chains are represented by chain 4R17.L which has more than 40% sequence identity.

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Entity #33 | Chains T,t

Description: Proteasome subunit beta type-4 protein | Length: 263

No structure alignment results are available for 6MSB.T, 6MSB.t explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains X

Description: 26S proteasome non-ATPase regulatory subunit 11 protein | Length: 422

No structure alignment results are available for 6MSB.X explicitly.

It is represented by chain 3TXN.A which has more than 70% sequence identity.

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Entity #5 | Chains Y

Description: 26S proteasome non-ATPase regulatory subunit 6 protein | Length: 389

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Entity #6 | Chains Z

Description: 26S proteasome non-ATPase regulatory subunit 7 protein | Length: 324

No structure alignment results are available for 6MSB.Z explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #7 | Chains a

Description: 26S proteasome non-ATPase regulatory subunit 13 protein | Length: 376

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Entity #8 | Chains b

Description: 26S proteasome non-ATPase regulatory subunit 4 protein | Length: 377

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Entity #9 | Chains c

Description: 26S proteasome non-ATPase regulatory subunit 14 protein | Length: 309

No structure alignment results are available for 6MSB.c explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References