Structural Similarities for the Entities in PDB 6NK6

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains M,N,O,P

Description: Matrix remodeling-associated protein 8 protein | Length: 269

No structure alignment results are available for 6NK6.M, 6NK6.N, 6NK6.O, 6NK6.P explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains A,B,C,D

Description: E1 glycoprotein protein | Length: 439

No structure alignment results are available for 6NK6.A, 6NK6.B, 6NK6.C, 6NK6.D explicitly.

These chains are represented by chain 3N44.F which has more than 90% sequence identity.

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Entity #3 | Chains E,F,G,H

Description: E2 glycoprotein protein | Length: 419

No structure alignment results are available for 6NK6.E, 6NK6.F, 6NK6.G, 6NK6.H explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains I,J,K,L

Description: Capsid protein protein | Length: 151

No structure alignment results are available for 6NK6.I, 6NK6.J, 6NK6.K, 6NK6.L explicitly.

These chains are represented by chain 4AGK.A which has more than 50% sequence identity.

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References