Structural Similarities for the Entities in PDB 6OGE

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Receptor tyrosine-protein kinase erbB-2 protein | Length: 622

No structure alignment results are available for 6OGE.A explicitly.

It is represented by chain 4UV7.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 6OGE.A compares with the representative chain PDP:4UV7Aa. Select a comparison method:


Entity #2 | Chains B

Description: Pertuzumab FAB LIGHT CHAIN protein | Length: 214

No structure alignment results are available for 6OGE.B explicitly.

It is represented by chain 4NZU.L which has more than 90% sequence identity.

Show structure comparison results

  Loading...

View how chain 6OGE.B compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains C

Description: Pertuzumab FAB HEAVY CHAIN protein | Length: 222

No structure alignment results are available for 6OGE.C explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 6OGE.C compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains D

Description: Trastuzumab FAB LIGHT CHAIN protein | Length: 214

No structure alignment results are available for 6OGE.D explicitly.

It is represented by chain 4NZU.L which has more than 90% sequence identity.

Show structure comparison results

  Loading...

View how chain 6OGE.D compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #5 | Chains E

Description: Trastuzumab FAB HEAVY CHAIN protein | Length: 220

No structure alignment results are available for 6OGE.E explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 6OGE.E compares with the representative chain xxxx. Select a comparison method:


References