Structural Similarities for the Entities in PDB 6QM7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,O

Description: Proteasome alpha1 chain protein | Length: 250

No structure alignment results are available for 6QM7.A, 6QM7.O explicitly.

These chains are represented by chain 5LE5.G which has more than 40% sequence identity.

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Entity #10 | Chains J,X

Description: Proteasome beta3 chain protein | Length: 205

No structure alignment results are available for 6QM7.J, 6QM7.X explicitly.

These chains are represented by chain 5LE5.I which has more than 40% sequence identity.

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Entity #11 | Chains K,Y

Description: Proteasome beta4 chain protein | Length: 206

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Entity #12 | Chains L,Z

Description: Proteasome beta5 chain protein | Length: 302

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Entity #13 | Chains M,a

Description: Proteasome beta6 chain protein | Length: 339

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Entity #14 | Chains N,b

Description: Proteasome beta7 chain protein | Length: 220

No structure alignment results are available for 6QM7.N, 6QM7.b explicitly.

These chains are represented by chain 5LE5.M which has more than 30% sequence identity.

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Entity #2 | Chains B,P

Description: Proteasome alpha2 chain protein | Length: 231

No structure alignment results are available for 6QM7.B, 6QM7.P explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #3 | Chains C,Q

Description: Proteasome alpha3 chain protein | Length: 285

No structure alignment results are available for 6QM7.C, 6QM7.Q explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains D,R

Description: Proteasome alpha4 chain protein | Length: 248

No structure alignment results are available for 6QM7.D, 6QM7.R explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E,S

Description: Proteasome alpha5 chain protein | Length: 344

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Entity #6 | Chains F,T

Description: Proteasome alpha6 chain protein | Length: 428

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Entity #7 | Chains G,U

Description: Proteasome alpha7 chain protein | Length: 238

No structure alignment results are available for 6QM7.G, 6QM7.U explicitly.

These chains are represented by chain 5LE5.F which has more than 40% sequence identity.

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Entity #8 | Chains H,V

Description: Proteasome beta1 chain protein | Length: 283

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Entity #9 | Chains I,W

Description: Proteasome beta2 chain protein | Length: 254

No structure alignment results are available for 6QM7.I, 6QM7.W explicitly.

These chains are represented by chain XXXX.null which has more than 30% sequence identity.

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References