Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in contracted state

Structural Similarities for the Entities in PDB 6RGL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: Afp2 protein | Length: 354


Entity #2 | Chains C

Description: Afp3 protein | Length: 451


Entity #3 | Chains D

Description: Afp4 protein | Length: 417