CARF - calcium responsive transcription factor

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

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Cross References
UniProt: Q8N187 HGNC Approved Gene Symbol: CARF 
Previous Symbols: ALS2CR8 Ensembl ENSG00000138380 
Synonyms : FLJ21579, CaRF, NYD-SP24 Previous Names: "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8"
HgncId : HGNC:14435  Omim: 607586 
Refseq: NM_001104586  GenBank: AB053309 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CARF Gene Structure

Chromosome: chr2
Genbank ID: NM_001104586 Orientation: +
Length coding sequence : 2175 nucleotides.
Regionstartendregion lengthphase at end
UTR202,941,859202,941,902
Exon202,941,903202,941,980780
Exon202,942,740202,942,9672280
Exon202,952,559202,952,6791211
Exon202,954,005202,954,1341302
Exon202,955,674202,955,758850
Exon202,961,237202,961,4261901
Exon202,966,978202,967,0981212
Exon202,969,919202,970,0621442
Exon202,971,505202,971,7382342
Exon202,974,334202,974,4961630
Exon202,977,269202,977,332641
Exon202,981,555202,981,6851310
Exon202,982,072202,982,4413701
Exon202,983,506202,983,6241190
UTR202,983,625202,986,485