CRNKL1 - crooked neck pre-mRNA splicing factor 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 12 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9BZJ0 HGNC Approved Gene Symbol: CRNKL1 
Ensembl ENSG00000101343 
Synonyms : CRN, CLF, SYF3, Clf1 Previous Names: "crooked neck (Drosophila Crn homolog)-like 1", "Crn, crooked neck-like 1 (Drosophila)", "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)"
HgncId : HGNC:15762  Omim: 610952 
GenBank: AF255443 
 
Currently highlighted: Genomic position: chr20:20,019,094 View in genomic position mapping tool
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CRNKL1 Gene Structure

Chromosome: chr20
Genbank ID: NM_001278628 Orientation: -
Length coding sequence : 2061 nucleotides.
Regionstartendregion lengthphase at end
UTR
20,032,98720,033,136
Exon20,032,93620,032,986510
Exon20,031,11420,031,2661530
Exon20,029,98420,030,075922
Exon20,028,98720,029,1451592
Exon20,028,40920,028,5751671
Exon20,025,95220,026,1301790
Exon20,024,13620,024,3061710
Exon20,022,96920,023,1601920
Exon20,022,21020,022,269600
Exon20,021,33020,021,410810
Exon20,020,25320,020,4922400
Exon20,018,99320,019,0941020
Exon20,017,96720,018,2152490
Exon20,016,83920,017,0061680
UTR
20,015,00520,016,838