KDM4A - lysine demethylase 4A

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 83 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O75164 HGNC Approved Gene Symbol: KDM4A 
Previous Symbols: JMJD2, JMJD2A Ensembl ENSG00000066135 
Synonyms : KIAA0677, JHDM3A, TDRD14A Previous Names: "jumonji domain containing 2", "jumonji domain containing 2A", "lysine (K)-specific demethylase 4A"
HgncId : HGNC:22978  Omim: 609764 
Refseq: NM_014663  GenBank: AB014577 
 
Genomic coordinates: Cytogenetic location: 1p34.2-p34.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

KDM4A Gene Structure

Chromosome: chr1
Genbank ID: NM_014663 Orientation: +
Length coding sequence : 3192 nucleotides.
Regionstartendregion lengthphase at end
UTR43,653,13643,653,175
Exon43,653,17643,653,3131380
Exon43,655,59143,655,7661762
Exon43,660,29843,660,4121150
Exon43,662,89443,663,0871942
Exon43,665,69643,665,745501
Exon43,666,45243,666,5551040
Exon43,666,95443,667,0911380
Exon43,667,77243,668,0192482
Exon43,669,10043,669,2992001
Exon43,671,50543,671,8753710
Exon43,683,68443,683,8041211
Exon43,688,91443,689,0951820
Exon43,690,84543,691,0492051
Exon43,691,49643,691,572770
Exon43,692,25643,692,311562
Exon43,693,99443,694,1021090
Exon43,694,70943,694,8941860
Exon43,697,84343,698,0131710
Exon43,703,61743,703,7361200
Exon43,704,02043,704,112930
Exon43,704,23043,704,3701410
UTR43,704,37143,705,518