KDM5B - lysine demethylase 5B

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 55 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9UGL1 HGNC Approved Gene Symbol: KDM5B 
Previous Symbols: JARID1B Ensembl ENSG00000117139 
Synonyms : RBBP2H1A, PLU-1, CT31, PPP1R98 Previous Names: "Jumonji, AT rich interactive domain 1B (RBP2-like)", "jumonji, AT rich interactive domain 1B", "lysine (K)-specific demethylase 5B"
HgncId : HGNC:18039  Omim: 605393 
Refseq: NM_006618  GenBank: AJ243706 
 
Genomic coordinates: Cytogenetic location: 1q32.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

KDM5B Gene Structure

Chromosome: chr1
Genbank ID: NM_006618 Orientation: -
Length coding sequence : 4632 nucleotides.
Regionstartendregion lengthphase at end
UTR
202,777,434202,778,598
Exon202,777,230202,777,4332040
Exon202,746,145202,746,222780
Exon202,743,741202,743,8631230
Exon202,742,246202,742,4161710
Exon202,736,054202,736,1881350
Exon202,733,177202,733,273971
Exon202,731,827202,731,9361100
Exon202,729,543202,729,7011590
Exon202,727,519202,727,6381200
Exon202,725,486202,725,6441590
Exon202,724,399202,724,5801822
Exon202,722,033202,722,1951630
Exon202,719,787202,719,9061200
Exon202,718,073202,718,2671950
Exon202,715,270202,715,4511822
Exon202,714,986202,715,1101251
Exon202,711,783202,711,9331512
Exon202,711,519202,711,6331150
Exon202,710,495202,710,8503562
Exon202,709,802202,709,9401390
Exon202,705,341202,705,5201800
Exon202,704,557202,704,7151590
Exon202,702,529202,703,0144860
Exon202,700,956202,701,0671121
Exon202,700,037202,700,1911550
Exon202,698,835202,699,1553210
Exon202,698,164202,698,3011380
UTR
202,694,313202,698,163