NOD1 - nucleotide binding oligomerization domain containing 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for NOD1 View list of all current human gene IDs
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Cross References
UniProt: Q9Y239 HGNC Approved Gene Symbol: NOD1 
Previous Symbols: CARD4 Ensembl ENSG00000106100 
Synonyms : NLRC1, CLR7.1 Previous Names: "caspase recruitment domain family, member 4"
HgncId : HGNC:16390  Omim: 605980 
GenBank: AF126484 
 
Genomic coordinates: Cytogenetic location: 7p14.3 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

NOD1 Gene Structure

Chromosome: chr7
Genbank ID: NM_006092 Orientation: -
Length coding sequence : 2859 nucleotides.
Regionstartendregion lengthphase at end
UTR30,518,22130,518,393
UTR30,499,51630,499,657
UTR30,498,76730,498,856
UTR
30,496,53830,496,658
Exon30,496,33730,496,5372010
Exon30,494,75330,494,9271751
Exon30,490,83230,492,65618252
Exon30,487,91430,487,997842
Exon30,486,58330,486,666842
Exon30,485,75730,485,840842
Exon30,477,18930,477,272842
Exon30,475,61430,475,697842
Exon30,472,71230,472,795842
Exon30,468,99030,469,073842
Exon30,465,25430,465,326730
UTR
30,464,14330,465,253