PRPF3 - pre-mRNA processing factor 3

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 7 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O43395 HGNC Approved Gene Symbol: PRPF3 
Previous Symbols: RP18 Ensembl ENSG00000117360 
Synonyms : Prp3, hPrp3, SNRNP90 Previous Names: "retinitis pigmentosa 18 (autosomal dominant)", "PRP3 pre-mRNA processing factor 3 homolog (yeast)", "PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)"
HgncId : HGNC:17348  Omim: 607301 
Refseq: NM_004698  GenBank: AF001947 
 
Genomic coordinates: Cytogenetic location: 1q21.2 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PRPF3 Gene Structure

Chromosome: chr1
Genbank ID: NM_004698 Orientation: +
Length coding sequence : 2049 nucleotides.
Regionstartendregion lengthphase at end
UTR150,297,352150,297,400
Exon150,297,401150,297,5451451
Exon150,298,209150,298,3391310
Exon150,300,779150,300,9251470
Exon150,305,155150,305,238840
Exon150,305,450150,305,6702212
Exon150,307,406150,307,7123070
Exon150,310,636150,310,8021672
Exon150,312,874150,312,953801
Exon150,315,785150,315,9281441
Exon150,316,638150,316,7371002
Exon150,316,910150,317,0231142
Exon150,318,494150,318,6121191
Exon150,318,884150,318,967841
Exon150,321,633150,321,694620
Exon150,325,309150,325,4551470
UTR150,325,456150,325,704