PRPF8 - pre-mRNA processing factor 8

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 34 View list of all current human gene IDs
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Cross References
UniProt: Q6P2Q9 HGNC Approved Gene Symbol: PRPF8 
Previous Symbols: RP13 Ensembl ENSG00000174231 
Synonyms : PRPC8, Prp8, hPrp8, SNRNP220 Previous Names: "PRP8 pre-mRNA processing factor 8 homolog (yeast)", "PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)"
HgncId : HGNC:17340  Omim: 607300 
GenBank: AB007510 
 
Genomic coordinates: Cytogenetic location: 17p13.3 reset view
Currently highlighted: Genomic position: chr17:1,586,995 View in genomic position mapping tool
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PRPF8 Gene Structure

Chromosome: chr17
Genbank ID: NM_006445 Orientation: -
Length coding sequence : 7005 nucleotides.
Regionstartendregion lengthphase at end
UTR1,588,0731,588,176
UTR
1,587,8661,587,876
Exon1,587,7661,587,8651001
Exon1,586,8271,586,9951692
Exon1,585,4231,585,5871652
Exon1,585,1141,585,3322192
Exon1,584,7721,584,9842132
Exon1,584,2231,584,3481262
Exon1,584,0201,584,1251060
Exon1,582,9031,583,0931912
Exon1,582,5851,582,7041202
Exon1,582,3111,582,5001900
Exon1,582,0561,582,1751200
Exon1,581,8121,581,9461350
Exon1,580,8591,580,9881301
Exon1,580,2701,580,4661970
Exon1,579,7991,580,0052070
Exon1,579,5011,579,6641642
Exon1,579,2221,579,3481270
Exon1,578,9141,579,1061931
Exon1,578,4461,578,6331880
Exon1,577,7361,577,9742392
Exon1,577,0401,577,1861472
Exon1,576,6511,576,8612110
Exon1,576,3751,576,4911170
Exon1,565,2001,565,4472482
Exon1,564,9051,565,0841802
Exon1,564,5651,564,7001360
Exon1,564,2871,564,4561702
Exon1,563,9921,564,1211300
Exon1,563,7261,563,8721470
Exon1,563,1351,563,2951612
Exon1,562,6511,562,8421922
Exon1,561,8201,562,0572380
Exon1,561,5471,561,6751290
Exon1,559,9421,560,0551140
Exon1,559,6861,559,8591740
Exon1,558,6441,558,8371942
Exon1,557,0711,557,3102402
Exon1,556,8361,556,9771420
Exon1,554,9421,555,0821410
Exon1,554,7081,554,8471402
Exon1,554,4021,554,6042031
Exon1,554,0961,554,2501550
UTR
1,553,9231,554,095