PRPF8 - pre-mRNA processing factor 8

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 34 View list of all current human gene IDs
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Cross References
UniProt: Q6P2Q9 HGNC Approved Gene Symbol: PRPF8 
Previous Symbols: RP13 Ensembl ENSG00000174231 
Synonyms : PRPC8, Prp8, hPrp8, SNRNP220 Previous Names: "PRP8 pre-mRNA processing factor 8 homolog (yeast)", "PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)"
HgncId : HGNC:17340  Omim: 607300 
GenBank: AB007510 
 
Genomic coordinates: Cytogenetic location: 17p13.3 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PRPF8 Gene Structure

Chromosome: chr17
Genbank ID: NM_006445 Orientation: -
Length coding sequence : 7005 nucleotides.
Regionstartendregion lengthphase at end
UTR1,684,7791,684,882
UTR
1,684,5721,684,582
Exon1,684,4721,684,5711001
Exon1,683,5331,683,7011692
Exon1,682,1291,682,2931652
Exon1,681,8201,682,0382192
Exon1,681,4781,681,6902132
Exon1,680,9291,681,0541262
Exon1,680,7261,680,8311060
Exon1,679,6091,679,7991912
Exon1,679,2911,679,4101202
Exon1,679,0171,679,2061900
Exon1,678,7621,678,8811200
Exon1,678,5181,678,6521350
Exon1,677,5651,677,6941301
Exon1,676,9761,677,1721970
Exon1,676,5051,676,7112070
Exon1,676,2071,676,3701642
Exon1,675,9281,676,0541270
Exon1,675,6201,675,8121931
Exon1,675,1521,675,3391880
Exon1,674,4421,674,6802392
Exon1,673,7461,673,8921472
Exon1,673,3571,673,5672110
Exon1,673,0811,673,1971170
Exon1,661,9061,662,1532482
Exon1,661,6111,661,7901802
Exon1,661,2711,661,4061360
Exon1,660,9931,661,1621702
Exon1,660,6981,660,8271300
Exon1,660,4321,660,5781470
Exon1,659,8411,660,0011612
Exon1,659,3571,659,5481922
Exon1,658,5261,658,7632380
Exon1,658,2531,658,3811290
Exon1,656,6481,656,7611140
Exon1,656,3921,656,5651740
Exon1,655,3501,655,5431942
Exon1,653,7771,654,0162402
Exon1,653,5421,653,6831420
Exon1,651,6481,651,7881410
Exon1,651,4141,651,5531402
Exon1,651,1081,651,3102031
Exon1,650,8021,650,9561550
UTR
1,650,6291,650,801