RPAP3 - RNA polymerase II associated protein 3

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 9 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9H6T3 HGNC Approved Gene Symbol: RPAP3 
Ensembl ENSG00000005175 
Synonyms : FLJ21908, spag, hSpagh
HgncId : HGNC:26151  Omim: 611477 
Refseq: NM_024604  GenBank: AK025561 
 
Genomic coordinates: Cytogenetic location: 12q13.11 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

RPAP3 Gene Structure

Chromosome: chr12
Genbank ID: NM_024604 Orientation: -
Length coding sequence : 1995 nucleotides.
Regionstartendregion lengthphase at end
UTR48,099,73448,099,844
UTR
48,096,62448,096,629
Exon48,096,47148,096,6231530
Exon48,095,24748,095,3871410
Exon48,091,38048,091,5021230
Exon48,090,05948,090,1861282
Exon48,084,30148,084,4221221
Exon48,082,90848,082,978710
Exon48,081,65948,081,7841260
Exon48,080,56348,080,6901282
Exon48,075,47948,075,6001221
Exon48,073,48748,073,557710
Exon48,073,27648,073,3771020
Exon48,063,89048,064,1282392
Exon48,062,69948,062,8851870
Exon48,061,53748,061,634982
Exon48,060,76348,060,8631011
Exon48,057,28848,057,373860
UTR
48,055,71548,057,287