SF3A1 - splicing factor 3a subunit 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 10 View list of all current human gene IDs
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Cross References
UniProt: Q15459 HGNC Approved Gene Symbol: SF3A1 
Ensembl ENSG00000099995 
Synonyms : SF3a120, SAP114, PRPF21, Prp21 Previous Names: "splicing factor 3a, subunit 1, 120kD", "splicing factor 3a, subunit 1, 120kDa"
HgncId : HGNC:10765  Omim: 605595 
Refseq: NM_005877  GenBank: X85237 
 
Genomic coordinates: Cytogenetic location: 22q12.2 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SF3A1 Gene Structure

Chromosome: chr22
Genbank ID: NM_005877 Orientation: -
Length coding sequence : 2379 nucleotides.
Regionstartendregion lengthphase at end
UTR
30,752,78230,752,936
Exon30,752,71930,752,781630
Exon30,748,94030,749,0611222
Exon30,742,30130,742,5082080
Exon30,740,92230,741,1792580
Exon30,738,79430,738,868750
Exon30,738,18930,738,3391511
Exon30,737,68130,737,8741940
Exon30,736,68430,736,8011181
Exon30,736,18530,736,3701861
Exon30,735,11930,735,2401220
Exon30,734,77830,735,0232460
Exon30,733,67930,733,8862081
Exon30,733,01530,733,1691550
Exon30,731,64130,731,7421020
Exon30,731,45630,731,527720
Exon30,730,58330,730,6841020
UTR
30,727,97730,730,582